def __init__(self, name=LSL_STREAM_NAMES[2], max_chunklen=8, n_channels=20):
streams = resolve_byprop('name', name, timeout=LSL_RESOLVE_TIMEOUT)
self.inlet = None
self.dtype = 'float64'
if len(streams) > 0:
self.inlet = StreamInlet(streams[0], max_buflen=1, max_chunklen=max_chunklen)
# self.dtype = fmt2string[self.inlet.info().channel_format()]
print(self.dtype)
self.n_channels = n_channels if n_channels else self.inlet.info().channel_count()
def __init__(self, name=LSL_STREAM_NAMES[2], only_this_host=False):
if not only_this_host:
streams = resolve_byprop('name', name, timeout=LSL_RESOLVE_TIMEOUT)
else:
streams = resolve_bypred("name='{}' and hostname='{}'".format(name, socket.gethostname()))
self.inlet = None
self.dtype = 'float64'
if len(streams) > 0:
self.inlet = FixedStreamInlet(streams[0], max_buflen=2)
# self.dtype = fmt2string[self.inlet.info().channel_format()]
print(self.dtype)
def peek(stream_name):
""" Connects to the specified stream and checks if it outputs samples """
# TODO This functionality does not work yet
stream = pylsl.resolve_byprop('name', stream_name)[0]
if stream:
inlet = pylsl.StreamInlet(stream)
time.sleep(3)
try:
while True:
sample, time_stamp = inlet.pull_sample(timeout=0)
print('[%d] %s' % (time_stamp, sample))
except KeyboardInterrupt:
print('Terminating peek')
def source2stream_inlet(source: Source, timeout=FOREVER) -> StreamInfo:
streams_info = resolve_byprop('source_id', source.source_id,
timeout=timeout)
if len(streams_info) == 1:
stream_info = streams_info[0]
return StreamInlet(stream_info)
elif len(streams_info) > 1:
raise ConnectionError(
'More than one source found for {}'.format(source.source_id))
else:
raise ConnectionError(
'No source {} found for receiving'.format(source.source_id))
def main(csv_out_path):
logger.info("Looking for Pupil Capture streams...")
streams = pylsl.resolve_byprop("name", "pupil_capture", timeout=TIMEOUT)
if not streams:
logger.error("No LSL streams of name 'pupil_capture' found")
exit(-1)
logger.info("Connecting to {}".format(streams[0].hostname()))
inlet = pylsl.StreamInlet(streams[0])
inlet.open_stream(timeout=TIMEOUT)
logger.info("Recording at {}".format(csv_out_path))
record(inlet, csv_out_path)
def start_grapher(stream_name=None, buffer_size=512):
buffer_size = int(buffer_size) # Can be string if given as argument!
if stream_name:
streams = pylsl.resolve_byprop('name', stream_name, timeout=5)
else:
streams = None
if streams:
stream_info = lslscan.get_stream_info_string(streams[0])
print('Connecting to stream: {}'.format(stream_info))
Grapher(streams[0], buffer_size)
elif stream_name:
print('No stream by name {} found...'.format(stream_name))
lslscan.scan_ui()
else:
lslscan.scan_ui()
def read_EEG_stream(fs=500, max_buf=2):
# Initialize EEG stream
# Arguments:
# fs: sampling frequency
# timeout: max time to look for whether EEG stream is available (seconds)
# max_buf: maximum data to have in buffer (seconds)
streamsEEG = resolve_byprop('type', 'EEG', timeout=1)
inlet_EEG = StreamInlet(streamsEEG[0], max_buflen=max_buf)
store_EEG = data_init(fs, 'EEG') # Initialize object
store_EEG.header = [
'P7', 'P4', 'Cz', 'Pz', 'P3', 'P8', 'O1', 'O2', 'T8', 'F8', 'C4', 'F4',
'Fp2', 'Fz', 'C3', 'F3', 'Fp1', 'T7', 'F7', 'Oz', 'PO3', 'AF3', 'FC5',
'FC1', 'CP5', 'CP1', 'CP2', 'CP6', 'AF4', 'FC2', 'FC6', 'PO4',
'Timestamp'
]
return inlet_EEG, store_EEG
def start_grapher(stream_name=None, buffer_size=512):
buffer_size = int(buffer_size) # Can be string if given as argument!
if stream_name:
streams = pylsl.resolve_byprop("name", stream_name, timeout=5)
else:
streams = None
if streams:
stream_info = lslscan.get_stream_info_string(streams[0])
print("Connecting to stream: {}".format(stream_info))
Grapher(streams[0], buffer_size)
elif stream_name:
print("No stream by name {} found...".format(stream_name))
lslscan.scan_ui()
else:
lslscan.scan_ui()
def receiver(self):
""" Receive data from an LSL stream and store it in a circular
buffer.
"""
streams = []
while not streams:
print("Trying to connect to the stream: " + self.lsl_stream_name)
streams = lsl.resolve_byprop('name',
self.lsl_stream_name,
timeout=10)
if not streams:
print("\tStream not found, re-trying...")
inlet = lsl.StreamInlet(streams[0], max_buflen=1)
print("\tDone")
i = 0
self.primary_last_time.value = 0 # init the last_time value
while self.run_state.value:
x, t = inlet.pull_sample()
self.primary_last_sample_received.value = time.time()
self.primary_lock.acquire() # LOCK-ON
for k in range(self.primary_n_channels):
self.primary_channel_data[k][self.primary_wptr.value] = x[k]
if t is None:
t = self.primary_last_time.value + self.primary_sampling_rate
self.primary_time_array[self.primary_wptr.value] = t
self.primary_last_time.value = t
i += 1
self.primary_wptr.value = i % self.primary_buffer_size
self.primary_lock.release() # LOCK-OFF
# is the buffer full
if (0 == self.primary_buffer_full.value) and (
i >= self.primary_buffer_size):
self.primary_buffer_full.value = 1
# Ending run, clear inlet
inlet.close_stream()
def start_sensor(self):
# connect to the sensor
self.dreader = DEAPReader(self.sampling_rate)
self.stream_process = threading.Thread(target=self.dreader.run,
args=(self.deap_data,
self.outlet))
self.stream_process.start()
self.streams = resolve_byprop('name', self.lsl_data_type, timeout=1)
if len(self.streams) < 1:
raise AttributeError(
'Unable to find LSL Stream with given type {0}'.format(
self.lsl_data_type))
self.inlet = StreamInlet(self.streams[0])
self.inlet.open_stream()
print(
'LSLInletInterface: resolved, created and opened inlet for lsl stream with type '
+ self.lsl_data_type)
def setup():
# setup LSL
global outlet
streams = resolve_byprop('name', LSL_STREAM_NAME, timeout=5)
'''
try:
inlet = StreamInlet(streams[0])
except IndexError:
raise ValueError('Make sure stream name="%s", is opened first.'
% LSL_STREAM_NAME)
'''
running = True
info = StreamInfo(LSL_BCI_STREAM_NAME, 'eeg', LSL_BCI_NUM_CHANNELS,
LSL_BCI_SAMPLE_RATE, 'float32', 'uid2')
outlet = StreamOutlet(info)
print('lsl stream has been setup')
def receiver(self):
""" Receive data from an LSL stream and store it in a circular
buffer.
"""
streams = []
while not streams:
print("Trying to connect to the stream: " + self.lsl_stream_name)
streams = lsl.resolve_byprop(
'name',
self.lsl_stream_name,
timeout=10)
if not streams:
print("\tStream not found, re-trying...")
inlet = lsl.StreamInlet(streams[0], max_buflen=1)
print("\tDone")
i = 0
self.last_time.value = 0 # init the last_time value
while self.run_state.value:
x, t = inlet.pull_sample()
self.lock_primary.acquire() # LOCK-ON
for k in range(self.n_channels):
self.channel_data[k][self.wptr.value] = x[k]
if t is None:
t = self.last_time.value + self.sampling_rate
self.time_array[self.wptr.value] = t
self.last_time.value = t
i += 1
self.wptr.value = i % self.buffer_size
self.lock_primary.release() # LOCK-OFF
# is the buffer full
if (0 == self.buffer_full.value) and (i >= self.buffer_size):
self.buffer_full.value = 1
# Ending run, clear inlet
inlet.close_stream()
def __init__(self):
self.buffer = buffer
print("looking for an EEG stream...")
self.streams = resolve_byprop('type', 'EEG', timeout=2)
if len(self.streams) == 0:
raise (RuntimeError("Cant find EEG stream"))
print("Start aquiring data")
self.stream = self.streams[0]
self.inlet = StreamInlet(self.stream, max_chunklen=buffer)
self.count = 0
self.chunks = 5
self.avg_len = 10
self.lazy_low = 0.9
self.lazy_high = 1.1
self.buf = CircularBuffer(self.chunks)
self.noise = {
'Delta': False,
'Theta': False,
'Alpha': False,
'Beta': False
}
self.state = {
'Delta': 'Low',
'Theta': 'Low',
'Alpha': 'Low',
'Beta': 'Low'
}
self.low_bound = {
'Delta': self.lazy_low,
'Theta': self.lazy_low,
'Alpha': self.lazy_low,
'Beta': self.lazy_low
}
self.high_bound = {
'Delta': self.lazy_high,
'Theta': self.lazy_high,
'Alpha': self.lazy_high,
'Beta': self.lazy_high
}
self._stop_loop = False
def __init__(self, source_id='classifier_output'):
"""
Parameters
----------
source_id : str
Pylsl stream source_id for incoming data
Default 'classifier_output'
"""
print("looking for stream \"" + str(source_id) + "\"...")
# streams = resolve_byprop('source_id', source_id, timeout=5)
streams = resolve_byprop('source_id', source_id, timeout=5)
if not streams:
raise TimeoutError('Stream \"' + str(source_id) +
'\" not found, timeout expired.')
self.inlet = StreamInlet(
streams[0], max_buflen=1
) # max_buflen=1 for real time (samples will be dropped instead instead of buffered)
print('found')
def __init__(self, sensor_type='eeg', port=1331):
print("Starting EEG Data Handler...")
ctx = zmq.Context()
self.sensor_type = sensor_type
self.sock = ctx.socket(zmq.PUB)
self.sock.setsockopt(zmq.SNDTIMEO, 1000)
self.sock.setsockopt(zmq.LINGER, 1000)
self.sock.setsockopt(zmq.IMMEDIATE, 1)
self.sock.bind(f"tcp://127.0.0.1:{port}")
self.current_lsl_streams = pylsl.resolve_byprop('type',
'EEG',
timeout=5)
print(type(self.current_lsl_streams))
print("Started")
if self.sensor_type == 'eeg':
# Set our data type to our chunk
self.dtype = EEGDataChunk(4, 12, None)
else:
print("other types are not implemented...")
def _muse_get_recent(self,
n_samples: int = 256,
restart_inlet: bool = False):
if self._muse_recent_inlet and not restart_inlet:
inlet = self._muse_recent_inlet
else:
# Initiate a new lsl stream
streams = resolve_byprop("type",
"EEG",
timeout=mlsl_cnsts.LSL_SCAN_TIMEOUT)
if not streams:
raise Exception(
"Couldn't find any stream, is your device connected?")
inlet = StreamInlet(streams[0],
max_chunklen=mlsl_cnsts.LSL_EEG_CHUNK)
self._muse_recent_inlet = inlet
info = inlet.info()
sfreq = info.nominal_srate()
description = info.desc()
n_chans = info.channel_count()
self.sfreq = sfreq
self.info = info
self.n_chans = n_chans
timeout = (n_samples / sfreq) + 0.5
samples, timestamps = inlet.pull_chunk(timeout=timeout,
max_samples=n_samples)
samples = np.array(samples)
timestamps = np.array(timestamps)
ch = description.child("channels").first_child()
ch_names = [ch.child_value("label")]
for i in range(n_chans):
ch = ch.next_sibling()
lab = ch.child_value("label")
if lab != "":
ch_names.append(lab)
df = pd.DataFrame(samples, index=timestamps, columns=ch_names)
return df
def listen_speed_markers(self):
count = 0
while self.controller.running:
streams = resolve_byprop('name', 'Oddball_speed', timeout=1)
if len(streams) > 0:
inlet = StreamInlet(streams[0])
print("oddball_speed stream found ")
while self.controller.running:
sample, timestamp = inlet.pull_sample(timeout=1)
if timestamp is not None:
print("got new speed %s at time %s" %
(sample[0], timestamp))
self.ITI = int(sample[0])
print('Close listening socket')
else:
print(count, "oddball_speed inlet not found")
count += 1
def _graph_lsl(self):
print('checking if stream has be initialized')
self.streams = resolve_byprop('name', 'bci', timeout=2.5)
try:
self.inlet = StreamInlet(self.streams[0])
except IndexError:
raise ValueError('Make sure stream name=bci is opened first.')
while self.running:
# initial run
self.sample, self.timestamp = self.inlet.pull_sample(timeout=5)
# time correction to sync to local_clock()
try:
if self.timestamp is not None and self.sample is not None:
self.timestamp = self.timestamp + self.inlet.time_correction(
timeout=5)
except TimeoutError:
pass
self.SecondTimes.append(
self.sample[1]) #add time stamps to array 'timeValSeconds'
self.ProcessedSig.append(
self.sample[0]) #add processed signal values to 'processedSig'
self.count = self.count + 1
if ((self.count % 20 == 0) and
(self.count !=
0)): #every 20 samples (ie ~ 0.10 s) is when plot updates
self.lineHandle[0].set_ydata(self.ProcessedSig)
self.lineHandle[0].set_xdata(self.SecondTimes)
#plt.xlim(0, 5)
plt.xlim(self.SecondTimes[0], self.SecondTimes[-1])
plt.ylim(0, 10)
plt.pause(0.01)
if (self.count >= 399):
self.ProcessedSig.pop(0)
self.SecondTimes.pop(0)
plt.pause(0.01)
print('closing graphing utility')
self.inlet.close_stream()
def __init__(self):
from muselsl import stream, list_muses
from pylsl import StreamInlet, resolve_byprop
muses = list_muses()
# stream module connects with Muse, but doesn't start streaming data
self.muse_ble_connect = multiprocessing.Process(
target=stream, args=(muses[0]["address"], ))
self.muse_ble_connect.start()
time.sleep(10)
self.streams = resolve_byprop("type", "EEG", timeout=2)
self.inlet = StreamInlet(self.streams[0], max_chunklen=1)
Helmet.__init__(self)
self.channels_number = 4
self.sampling_rate = 256
def run(self):
sinfo = pylsl.resolve_byprop("name", "localite_marker")[0]
stream = pylsl.StreamInlet(sinfo)
msg = []
time.sleep(1)
msg, t1 = stream.pull_chunk()
self.running = True
while self.running:
try:
msg, t1 = stream.pull_chunk()
print(msg)
if msg == []:
time.sleep(0.001)
else:
self.running = False
except pylsl.pylsl.LostError:
break
self.msg = msg
self.t1 = t1
del stream
def __init__(self, device, max_chunklen=0, stream_type='EEG'):
streams = resolve_byprop('type', stream_type, timeout=2)
if len(streams) == 0:
raise RuntimeError('no EEG stream found')
inlet, timecorrect, info, descrition, sampling_f, num_channels = self.get_Stream_Info(
streams)
## getting the names of the channels, not sure if this is needed
ch = descrition.child('channels').first_child()
self.ch_names = [ch.child_value('label')]
for i in range(1, num_channels):
ch = ch.next_sibling()
self.ch_names.append(ch.child_value('label'))
## getting the buffer lengths, epoch lengths, overlap
buffer_len = 15 ## change to a user input (or from device)
epoch_len = 1 #same as above comment
overlap_len = 0.8 # this is also dependent of the device file
def __init__(self):
# check device manager for correct COM port.
self.board = bci.OpenBCIBoard(port='COM3',
filter_data=True,
daisy=False)
# setup LSL
streams = resolve_byprop('name', self.LSL_STREAM_NAME, timeout=2.5)
try:
self.inlet = StreamInlet(streams[0])
except IndexError:
raise ValueError('Make sure stream name="%s", is opened first.' %
LSL_STREAM_NAME)
self.running = True
self.samples = []
info = StreamInfo(self.LSL_BCI_STREAM_NAME, 'eeg',
self.LSL_BCI_NUM_CHANNELS, self.LSL_BCI_SAMPLE_RATE,
'float32', 'uid2')
self.outlet = StreamOutlet(info)
def __init__(self):
print("looking for an EEG stream...")
streams = resolve_byprop("type", "EEG")
# create a new inlet to read from the stream
proc_flags = proc_clocksync | proc_dejitter | proc_monotonize
self.inlet = StreamInlet(streams[0], processing_flags=proc_flags)
# The following is an example of how to read stream info
stream_info = self.inlet.info()
stream_Fs = stream_info.nominal_srate()
stream_xml = stream_info.desc()
chans_xml = stream_xml.child("channels")
chan_xml_list = []
ch = chans_xml.child("channel")
while ch.name() == "channel":
chan_xml_list.append(ch)
ch = ch.next_sibling("channel")
self.channel_names = [ch_xml.child_value("label") for ch_xml in chan_xml_list]
print("Reading from inlet named {} with channels {} sending data at {} Hz".format(stream_info.name(),
self.channel_names, stream_Fs))
def __init__(self):
Thread.__init__(self)
# Enough for 1 sec at 256 Hz
self.BUFFER = 256
print("looking for an EEG stream...")
self.streams = resolve_byprop('type', 'EEG', timeout=2)
if len(self.streams) == 0:
raise(RuntimeError("Cant find EEG stream"))
print("Start aquiring data")
self.stream = self.streams[0]
self.inlet = StreamInlet(self.stream, max_chunklen=BUFFER)
self.times = []
self.count = 0
self.chunks = 3
self.ave_len = 10
self.ave = [0.0, 0.0]
self.buf = CircularBuffer(self.chunks)
self.state = 'noise'
def update(self):
if not self._inlet:
self.logger.debug(
f"Resolving stream with {self._prop} {self._value}")
streams = resolve_byprop(self._prop,
self._value,
timeout=self._timeout)
if not streams:
return
self.logger.debug("Stream acquired")
self._inlet = StreamInlet(streams[0])
info = self._inlet.info()
self._meta = {
"name": info.name(),
"type": info.type(),
"rate": info.nominal_srate(),
"info": str(info.as_xml()).replace("\n", "").replace("\t", ""),
}
if isinstance(self._channels, list):
self._labels = self._channels
else:
description = info.desc()
channel = description.child("channels").first_child()
self._labels = [channel.child_value("label")]
for _ in range(info.channel_count() - 1):
channel = channel.next_sibling()
self._labels.append(channel.child_value("label"))
if self._inlet:
values, stamps = self._inlet.pull_chunk(
max_samples=self._max_samples)
if stamps:
stamps = pd.to_datetime(stamps, format=None, unit=self._unit)
if self._sync == "local":
stamps += self._offset
elif self._sync == "network":
stamps = (stamps + np.timedelta64(
self._inlet.time_correction() * 1e9, "ns") +
self._offset)
self.o.set(values, stamps, self._labels, self._meta)
def record_eeg_filtered(r_length,
freq,
channel_i,
notch=False,
filter_state=None):
streams = resolve_byprop('type', 'EEG', timeout=2)
inlet = StreamInlet(streams[0], max_chunklen=12)
""" Records EEG data from headset
Arguments:
r_length -- how many seconds of data to record
freq -- sample rate
channel_i -- channels to keep data from
Returns:
data -- array of recorded data [sample, channel]
"""
data, timestamps = inlet.pull_chunk(timeout=r_length + 1,
max_samples=int(freq * r_length))
data = np.array(data)[:, channel_i]
if notch:
if filter_state is None:
filter_state = np.tile(lfilter_zi(NOTCH_B, NOTCH_A),
(data.shape[1], 1)).T
data, filter_state = lfilter(NOTCH_B,
NOTCH_A,
data,
axis=0,
zi=filter_state)
return data
def startRecording(self):
self.recording = True
try:
while (self.recording == True):
streams = resolve_byprop('type', 'EEG', timeout=2)
inlet = StreamInlet(streams[0], max_chunklen=12)
# Obtain EEG data from the LSL stream
eeg_data, timestamp = inlet.pull_chunk(
timeout=1, max_samples=int(self.SHIFT_LENGTH * self.freq))
ch_data = np.array(eeg_data)[:, self.INDEX_CHANNEL]
# Update EEG data and apply filter
self.eeg_raw, self.filter_state = BCI.update_buffer(
self.eeg_raw,
ch_data,
notch=True,
filter_state=self.filter_state)
except KeyboardInterrupt:
print("Exception")
def read_marker_stream(stream_name='alphaStream'):
'''
Reads stream from an outlet (alphaStream from run_CL script)
'''
index_alpha = []
alpha_created = []
streams = resolve_byprop('type', 'Markers', timeout=10)
for i in range(len(streams)):
if (streams[i].name() == stream_name):
index_alpha.append(i)
alpha_created.append(streams[i].created_at())
if index_alpha:
if len(index_alpha) > 1:
#print("Not unique marker stream name, using most recent one")
index_alpha = index_alpha[np.argmax(alpha_created)]
#print ("alpha stream available")
#inlet = StreamInlet(streams[index_alpha[0]]) #REAL ONE
inlet = StreamInlet(streams[index_alpha[0]])
else:
print('Warning: No marker inlet available')
return inlet
def __init__(self):
pupil_queue = Queue()
self.pupil_proc = Process(target=pupil_capture.alternate_launch,
args=((pupil_queue), ))
self.pupil_proc.start()
while True:
pupil_msg = pupil_queue.get()
print(pupil_msg)
if 'tcp' in pupil_msg:
self.ipc_sub_url = pupil_msg
if 'EYE_READY' in pupil_msg:
break
context = zmq.Context()
self.socket = zmq.Socket(context, zmq.SUB)
monitor = self.socket.get_monitor_socket()
self.socket.connect(self.ipc_sub_url)
while True:
status = recv_monitor_message(monitor)
if status['event'] == zmq.EVENT_CONNECTED:
break
elif status['event'] == zmq.EVENT_CONNECT_DELAYED:
pass
print('Capturing from pupil on url %s.' % self.ipc_sub_url)
self.socket.subscribe('pupil')
# setup LSL
streams = resolve_byprop('name', LSL_STREAM_NAME, timeout=2.5)
try:
self.inlet = StreamInlet(streams[0])
except IndexError:
raise ValueError('Make sure stream name="%s", is opened first.'
% LSL_STREAM_NAME)
self.running = True
self.samples = []
def update(self):
if not self._inlet:
self.logger.debug(
f'Resolving stream with {self._prop} {self._value}')
streams = resolve_byprop(self._prop,
self._value,
timeout=self._timeout)
if not streams: return
self.logger.debug('Stream acquired')
self._inlet = StreamInlet(streams[0])
info = self._inlet.info()
self._meta = {
'name': info.name(),
'type': info.type(),
'rate': info.nominal_srate(),
'info': str(info.as_xml()).replace('\n', '').replace('\t', '')
}
if isinstance(self._channels, list):
self._labels = self._channels
else:
description = info.desc()
channel = description.child('channels').first_child()
self._labels = [channel.child_value('label')]
for _ in range(info.channel_count() - 1):
channel = channel.next_sibling()
self._labels.append(channel.child_value('label'))
if self._inlet:
values, stamps = self._inlet.pull_chunk(
max_samples=self._max_samples)
if stamps:
stamps = np.array(stamps)
if self._sync == 'local':
stamps += self._offset
elif self._sync == 'network':
stamps = stamps + self._inlet.time_correction(
) + self._offset
stamps = pd.to_datetime(stamps, format=None, unit=self._unit)
self.o.set(values, stamps, self._labels, self._meta)
def start_client(server_name):
"""
Search and connect to an LSL server
Params
------
server_name:
Name of the server to search
Returns
-------
inlet:
LSL client object
"""
print('Searching for LSL server %s' % server_name)
while True:
streamInfos = pylsl.resolve_byprop("name", server_name)
for sinfo in streamInfos:
print('Found %s' % sinfo.name())
'''
if len(streamInfos) > 1:
print('>> Error: More than 1 server with the same name %s found. Stopping.'% server_name)
sys.exit(-1)
elif len(streamInfos)==1:
sinfo= streamInfos[0]
break
else:
print('[cnbi_lsl] No desired LSL server found. Keep searching...')
time.sleep(1.0)
'''
if len(streamInfos) == 0:
print('[cnbi_lsl] No desired LSL server found. Keep searching...')
time.sleep(1.0)
else:
sinfo = streamInfos[0]
break
return pylsl.StreamInlet(sinfo)
def read_marker_stream(stream_name='MyMarkerStream3'):
'''
Initializes the marker stream (time stamps of the EEG data).
# Arguments
stream_name: string
# Returns
inlet_marker: pylsl object
The marker/trigger inlet from experimentFunctions.py script.
store_marker: class object
'''
index_lsl = []
lsl_created = []
streams = resolve_byprop('type', 'Markers',
timeout=10) # Look for stream(s)
for i in range(len(streams)):
if (streams[i].name() == stream_name):
index_lsl.append(i)
lsl_created.append(
streams[i].created_at()) # Store when the stream was created
if index_lsl:
if len(index_lsl) > 1: # Multiple streams available
print("Not unique marker stream name, using the most recent one")
index_lsl = index_lsl[np.argmax(lsl_created)]
else: # One stream available
index_lsl = index_lsl[np.argmax(lsl_created)]
print("lsl stream available")
inlet_marker = StreamInlet(streams[index_lsl])
store_marker = data_init(settings.samplingRate,
'marker') # Initialize marker object
store_marker.header = ['Marker', 'Timestamp']
else:
inlet_marker = []
print('Warning: No marker inlet available')
return inlet_marker, store_marker
def dataReaderLSL(streamName, q):
while True:
print("Waiting for LSL stream")
try:
results = resolve_byprop(prop='name', value=streamName)
while len(results) == 0:
time.sleep(0.25)
info = results[0]
inlet = StreamInlet(info, recover=False)
print("Streaming...")
# Read data in forever
try:
while True:
data = inlet.pull_sample()
if data:
q.put(np.array(data[0]))
time.sleep(1 / 200)
except Exception as e:
print(e)
pass
except Exception as e:
print(e)
pass
def __init__(self, lsl_data_type, num_channels,
sampling_rate): # default board_id 2 for Cyton
self.lsl_data_type = lsl_data_type
self.lsl_num_channels = num_channels
self.sampling_rate = sampling_rate
with open('data/s01.dat', "rb") as f:
deap_data = pickle.load(f, encoding="latin1")
deap_data = np.array(deap_data['data'])
# flatten so we have a continuous stream
self.deap_data = deap_data.reshape(
deap_data.shape[1], deap_data.shape[0] * deap_data.shape[2])
self.dreader = None
self.stream_process = None
info = StreamInfo('DEAP Simulation', 'EEG', num_channels,
self.sampling_rate, 'float32', 'deapcontinuous')
self.outlet = StreamOutlet(info, 32, 360)
self.streams = resolve_byprop('name', self.lsl_data_type, timeout=1)
if len(self.streams) < 1:
raise AttributeError(
'Unable to find LSL Stream with given type {0}'.format(
lsl_data_type))
self.inlet = StreamInlet(self.streams[0])
pass
def dataReaderLSLChunk(streamName, q):
while True:
print("Waiting for LSL stream")
try:
results = resolve_byprop(prop='name', value=streamName)
while len(results) == 0:
time.sleep(0.25)
info = results[0]
inlet = StreamInlet(info, recover=False)
print("Streaming...")
# Read data in forever
try:
while True:
chunk, timestamps = inlet.pull_chunk()
if len(chunk) > 0:
q.put(np.array(chunk[len(chunk) - 1]))
time.sleep(1 / 120)
except Exception as e:
print(e)
pass
except Exception as e:
print(e)
pass
def _initialize(self):
stream_infos = lsl.resolve_byprop(
'name',
self.source_name,
timeout=self.SECONDS_TO_WAIT_FOR_THE_STREAM)
if len(stream_infos) == 0:
raise ValueError('Cannot find LSL stream with name {}'.format(
self.source_name))
elif len(stream_infos) > 1:
raise ValueError('Multiple LSL streams with name {}.'.format(
self.source_name))
else:
info = stream_infos[0]
# self._inlet = lsl.StreamInlet(info)
self._inlet = FixedStreamInlet(info)
self._inlet.open_stream()
frequency = info.nominal_srate()
self.dtype = DTYPE
channel_labels, channel_types = read_channel_labels_from_info(
self._inlet.info())
self.mne_info = mne.create_info(channel_labels,
frequency,
ch_types=channel_types)
def __init__(self):
print("looking for an EEG stream...")
streams = resolve_byprop("type", "EEG")
# create a new inlet to read from the stream
proc_flags = proc_clocksync | proc_dejitter | proc_monotonize
self.inlet = StreamInlet(streams[0], processing_flags=proc_flags)
# The following is an example of how to read stream info
stream_info = self.inlet.info()
stream_Fs = stream_info.nominal_srate()
stream_xml = stream_info.desc()
chans_xml = stream_xml.child("channels")
chan_xml_list = []
ch = chans_xml.child("channel")
while ch.name() == "channel":
chan_xml_list.append(ch)
ch = ch.next_sibling("channel")
self.channel_names = [
ch_xml.child_value("label") for ch_xml in chan_xml_list
]
print(
"Reading from inlet named {} with channels {} sending data at {} Hz"
.format(stream_info.name(), self.channel_names, stream_Fs))
def listen_mouse_events(self):
count = 0
while self.controller.running:
streams = resolve_byprop('name', 'MouseButtons', timeout=1)
if len(streams) > 0:
inlet = StreamInlet(streams[0])
print("oddball_speed stream found ")
while self.controller.running:
sample, timestamp = inlet.pull_sample(timeout=1)
# mouse_event = "MouseButtonRight pressed"
mouse_event = "MouseButtonX2 pressed"
if timestamp is not None and sample[0] == mouse_event:
if time.time() - self.last_pressed > 3:
self.last_pressed = time.time()
self.counting = not self.counting
print("got new speed %s at time %s" %
(sample[0], timestamp))
print('Close listening socket')
else:
print(count, "MouseButtons inlet not found")
count += 1
if __name__ == "__main__":
""" 0. PARSE ARGUMENTS """
parser = argparse.ArgumentParser(description='BCI Workshop example 2')
parser.add_argument('channels', metavar='N', type=int, nargs='*',
default=[0, 1, 2, 3],
help='channel number to use. If not specified, all the channels are used')
args = parser.parse_args()
""" 1. CONNECT TO EEG STREAM """
# Search for active LSL stream
print('Looking for an EEG stream...')
streams = resolve_byprop('type', 'EEG', timeout=2)
if len(streams) == 0:
raise RuntimeError('Can\'t find EEG stream.')
# Set active EEG stream to inlet and apply time correction
print("Start acquiring data")
inlet = StreamInlet(streams[0], max_chunklen=12)
eeg_time_correction = inlet.time_correction()
# Get the stream info, description, sampling frequency, number of channels
info = inlet.info()
description = info.desc()
fs = int(info.nominal_srate())
n_channels = info.channel_count()
# Get names of all channels
import tkinter as tk
from eegstream.gui import Monitor
from eegstream.streaming.signal import SignalInterface
if __name__ == "__main__":
from pylsl import resolve_byprop, StreamInlet
from eegstream.devices import OpenBCI8
source_id = OpenBCI8.source_id
window = 2.0
print("looking for a stream...")
stream_info = resolve_byprop("source_id", source_id, timeout=1)[0]
print(stream_info)
stream_inlet = StreamInlet(stream_info)
signal_interface = SignalInterface(stream_inlet, window)
monitor = Monitor(signal_interface)
monitor.start_mainloop()
def __init__(self, stream_name='EOG', srate=500):
""" Initialize the PyGERT-object
Args:
stream_name <string>: name of the lsl stream to connect to
"""
self._is_trained = False
if stream_name: # This needs error handling!
self._stream_handle = lsl.resolve_byprop('name', stream_name)[0]
self._inlet = lsl.StreamInlet(self._stream_handle)
self.srate = self._stream_handle.nominal_srate()
else:
self.srate = srate # Fix this later
# Configure filters
filt_len = 150
stop_limit1 = 500 / self.srate
stop_limit2 = 40
wn1 = stop_limit1 / (self.srate/2)
wn2 = stop_limit2 / (self.srate/2)
self._group_delay = (filt_len - 1) / 2
self._b1 = sig.firwin(filt_len, wn1)
self._b2 = sig.firwin(filt_len, wn2)
self._z1_h = sig.lfilter_zi(self._b1, 1)
self._z1_v = sig.lfilter_zi(self._b1, 1)
self._z2_h = sig.lfilter_zi(self._b2, 1)
self._z2_v = sig.lfilter_zi(self._b2, 1)
self._eog_h_prev1 = 0
self._eog_v_prev1 = 0
self._eog_h_prev2 = 0
self._eog_v_prev2 = 0
# Buffers
self._MAX_SACCADE_LENGTH = .2
self._MAX_BLINK_LEN = .5
self._MIN_SACCADE_LEN = .01
self._MIN_BLINK_LEN = .2
self._MIN_SACCADE_GAP = .1
buffer_len_saccade = round(self._MAX_SACCADE_LENGTH * self.srate)
buffer_len_blink = round(self._MAX_BLINK_LEN * self.srate)
self._norm_d2 = np.zeros(buffer_len_saccade)
self._eog_v2 = np.zeros(buffer_len_blink)
self._psn = np.zeros(buffer_len_saccade)
self._fix_prob_mass = 0
self._saccade_samples = 0
self._saccade_prob = 0
self._blink_samples = 0
self._blink_prob = 0
self._n = 0
self._n_sac = 0
self._n_blink = 0
self._SAC_START = []
self._SAC_END = []
self._SAC_DUR = []
self._SAC_PROB = []
self._BLI_START = []
self._BLI_END = []
self._BLI_DUR = []
self._BLI_PROB = []
# Flags
self._blink_on = False
self._saccade_on = False
import sys
from pylsl import StreamInlet, resolve_byprop
import numpy as np
from eegstream.devices import Experiment, OpenBCI8
if __name__ == '__main__':
assert len(sys.argv) > 0, 'No experiment name provided'
filename = sys.argv[1]
timequant = 0.100 #s
print("looking for device stream")
device = OpenBCI8
bci_info = resolve_byprop('source_id', device.source_id, timeout=1)[0]
print("Device stream discovered")
print('Looking for GUI source')
experiment_info = resolve_byprop('source_id', Experiment.source_id,
timeout=100)[0]
print('GUI source discovered')
#print(experiment_info, bci_info)
experiment_inlet = StreamInlet(experiment_info)
bci_inlet = StreamInlet(bci_info)
bci_results = [[], []]
experiment_results = [[], []]
print('Recording')