def pymcplot(self):
'''
Generates a pymc plot for each parameter in self.. This plot
includes a trace, histogram, and autocorrelation plot. For more control
over the plots, see MCMCplots module. This is meant as a diagnostic
tool only.
'''
from pymc.Matplot import plot as pymc_plot
for name in self.params.keys():
pymc_plot(self.db.trace(name), format='png', path=self.working_dir)
print 'pymc plots generated for = %s' % self.params.keys()
def plot_pymc_autocorrelation(mcmc_database, keys, working_dir):
for key in keys:
trace = mcmc_database.trace(key)
pymc_plot(trace, 'png', path=working_dir)
return None