"""proc.py
"""
import sys
sys.path.append("/x/PyMS")
from pyms.GCMS.IO.JCAMP.Function import JCAMP_reader
from pyms.GCMS.Function import build_intensity_matrix
from pyms.Utils.IO import save_data
# read the raw data as a GCMS_data object
jcamp_file = "/x/PyMS/data/gc01_0812_066.jdx"
data = JCAMP_reader(jcamp_file)
# IntensityMatrix
# must build intensity matrix before accessing any intensity matrix methods.
# default, float masses with interval (bin interval) of one from min mass
print "default intensity matrix, bin interval = 1, boundary +/- 0.5"
im = build_intensity_matrix(data)
#
# Saving data
#
# save the intensity matrix values to a file
mat = im.get_matrix_list()
print "saving intensity matrix intensity values..."
save_data("output/im.dat", mat)
# Export the entire IntensityMatrix as CSV. This will create
