def __init__(self, app, **kwargs):
super().__init__(**kwargs)
self.app = app
v_layout = QtWidgets.QVBoxLayout()
layout = QtWidgets.QHBoxLayout()
self.params = xml_file_to_params()
self.general_settings = GeneralSettingsWidget(parent=self)
v_layout.addWidget(self.general_settings)
v_layout.addLayout(layout)
self.protocols_list = ProtocolsSettingsWidget(parent=self)
self.signals_list = SignalsSettingsWidget(parent=self)
self.composite_signals_list = CompositeSignalsSettingsWidget(parent=self)
self.protocol_groups_list = ProtocolGroupsSettingsWidget(parent=self)
self.protocols_sequence_list = ProtocolSequenceSettingsWidget(parent=self)
# layout.addWidget(self.general_settings)
layout.addWidget(self.signals_list)
layout.addWidget(self.composite_signals_list)
layout.addWidget(self.protocols_list)
layout.addWidget(self.protocol_groups_list)
layout.addWidget(self.protocols_sequence_list)
start_button = QtWidgets.QPushButton('Start')
start_button.setIcon(QtGui.QIcon(static_path + '/imag/power-button.png'))
start_button.setMinimumHeight(50)
start_button.setMinimumWidth(300)
start_button.clicked.connect(self.onClicked)
name_layout = QtWidgets.QHBoxLayout()
v_layout.addWidget(start_button, alignment=QtCore.Qt.AlignCenter)
self.setLayout(v_layout)
def restore_online_signal(h5_dataset,
signal_name,
band=None,
spatial_filter=None,
smoothing_factor=0.999):
df, fs, channels, p_names = load_data(h5_dataset)
n_channels = len(channels)
with h5py.File(h5_dataset) as f:
last_block = len(df.block_number.unique())
if spatial_filter is None:
spatial_filter = f['protocol{}/signals_stats/Signal/spatial_filter'
.format(last_block)][:]
if band is None:
band = f['protocol{}/signals_stats/Signal/bandpass'.format(
last_block)][:]
xml_settings = load_xml_str_from_hdf5_dataset(h5_dataset, 'settings.xml')
params = xml_file_to_params(xml_settings)
signals_params_list = params['vSignals']['DerivedSignal']
signals_names = [s['sSignalName'] for s in signals_params_list]
signal = signals_params_list[signals_names.index(signal_name)]
signal['fBandpassLowHz'], signal['fBandpassHighHz'] = band
signal['sTemporalFilterType'] = 'butter'
signal['fSmoothingFactor'] = smoothing_factor
signal = DerivedSignal.from_params(0, fs, n_channels, channels, signal,
spatial_filter)
time_series = signal.update(df[channels].values)
return signal, time_series
def __init__(self, app, **kwargs):
super().__init__(**kwargs)
self.app = app
v_layout = QtWidgets.QVBoxLayout()
layout = QtWidgets.QHBoxLayout()
self.params = xml_file_to_params()
self.general_settings = GeneralSettingsWidget(parent=self)
v_layout.addWidget(self.general_settings)
v_layout.addLayout(layout)
self.protocols_list = ProtocolsSettingsWidget(parent=self)
self.signals_list = SignalsSettingsWidget(parent=self)
self.composite_signals_list = CompositeSignalsSettingsWidget(
parent=self)
self.protocol_groups_list = ProtocolGroupsSettingsWidget(parent=self)
self.protocols_sequence_list = ProtocolSequenceSettingsWidget(
parent=self)
# layout.addWidget(self.general_settings)
layout.addWidget(self.signals_list)
layout.addWidget(self.composite_signals_list)
layout.addWidget(self.protocols_list)
layout.addWidget(self.protocol_groups_list)
layout.addWidget(self.protocols_sequence_list)
start_button = QtWidgets.QPushButton('Start')
start_button.setIcon(
QtGui.QIcon(static_path + '/imag/power-button.png'))
start_button.setMinimumHeight(50)
start_button.setMinimumWidth(300)
start_button.clicked.connect(self.onClicked)
name_layout = QtWidgets.QHBoxLayout()
v_layout.addWidget(start_button, alignment=QtCore.Qt.AlignCenter)
self.setLayout(v_layout)
def restore_online_signal(h5_dataset, signal_name, band=None, spatial_filter=None, smoothing_factor=0.999):
df, fs, channels, p_names = load_data(h5_dataset)
n_channels = len(channels)
with h5py.File(h5_dataset) as f:
last_block = len(df.block_number.unique())
if spatial_filter is None:
spatial_filter = f['protocol{}/signals_stats/Signal/spatial_filter'.format(last_block)][:]
if band is None:
band = f['protocol{}/signals_stats/Signal/bandpass'.format(last_block)][:]
xml_settings = load_xml_str_from_hdf5_dataset(h5_dataset, 'settings.xml')
params = xml_file_to_params(xml_settings)
signals_params_list = params['vSignals']['DerivedSignal']
signals_names = [s['sSignalName'] for s in signals_params_list]
signal = signals_params_list[signals_names.index(signal_name)]
signal['fBandpassLowHz'], signal['fBandpassHighHz'] = band
signal['sTemporalFilterType'] = 'butter'
signal['fSmoothingFactor'] = smoothing_factor
signal = DerivedSignal.from_params(0, fs, n_channels, channels, signal, spatial_filter)
time_series = signal.update(df[channels].values)
return signal, time_series
def main():
app = QtWidgets.QApplication(sys.argv)
experiment = Experiment(app, xml_file_to_params('bci_default.xml'))
sys.exit(app.exec_())
# parse arguments
parser = argparse.ArgumentParser()
parser.add_argument('--nfblab')
parser.add_argument('--design')
args = parser.parse_args()
# validate arguments
if args.design is None or args.nfblab is None:
raise SyntaxError('\nPlease provide all arguments: '
'\n\t --nfblab Path to nfb directory'
'\n\t --design Path to design file')
if not os.path.isfile(args.design):
raise FileNotFoundError('No such design file {}. Please, correct --design value.'.format(args.design))
if not os.path.isdir(args.nfblab):
raise FileNotFoundError("Path to nfblab doesn't exist. Please, correct --nfblab value.")
sys.path.insert(0, args.nfblab)
if importlib.util.find_spec('pynfb') is None:
raise ImportError('Cannot import nfblab package. Please, correct --nfblab value')
# import NFBLab
from pynfb.experiment import Experiment
from pynfb.serializers.xml_ import xml_file_to_params
# run experiment
app = QtWidgets.QApplication(sys.argv)
experiment = Experiment(app, xml_file_to_params(args.design))
sys.exit(app.exec_())
def main():
app = QtWidgets.QApplication(sys.argv)
experiment = Experiment(app, xml_file_to_params('bci_default.xml'))
sys.exit(app.exec_())
args = parser.parse_args()
# validate arguments
if args.design is None or args.nfblab is None:
raise SyntaxError('\nPlease provide all arguments: '
'\n\t --nfblab Path to nfb directory'
'\n\t --design Path to design file')
if not os.path.isfile(args.design):
raise FileNotFoundError(
'No such design file {}. Please, correct --design value.'.format(
args.design))
if not os.path.isdir(args.nfblab):
raise FileNotFoundError(
"Path to nfblab doesn't exist. Please, correct --nfblab value.")
sys.path.insert(0, args.nfblab)
if importlib.util.find_spec('pynfb') is None:
raise ImportError(
'Cannot import nfblab package. Please, correct --nfblab value')
# import NFBLab
from pynfb.experiment import Experiment
from pynfb.serializers.xml_ import xml_file_to_params
# run experiment
app = QtWidgets.QApplication(sys.argv)
experiment = Experiment(app, xml_file_to_params(args.design))
sys.exit(app.exec_())