KEGG_GENES_PREFIX = "kegg.genes"
KEGG_GENOME_PREFIX = "kegg.genome"
KEGG_PATHWAY_PREFIX = "kegg.pathway"
BASE = "http://rest.kegg.jp"
SKIP = {
"T03333",
"T03334",
"T03356",
"T03357",
"T03358",
"T03359",
}
from_kegg_species = TypeDef(
reference=Reference.default("inKeggTaxon", "in KEGG taxon"),
parents=from_species.reference,
)
@dataclass
class KEGGGenome:
"""A data structure for a parsed line of the KEGG Genomes list."""
identifier: str
name: str
code: Optional[str]
long_code: Optional[str]
taxonomy_id: Optional[str]
def annotate_term(self, term: Term) -> None:
KEGG_GENES_PREFIX = 'kegg.genes'
KEGG_GENOME_PREFIX = 'kegg.genome'
KEGG_PATHWAY_PREFIX = 'kegg.pathway'
BASE = 'http://rest.kegg.jp'
SKIP = {
'T03333',
'T03334',
'T03356',
'T03357',
'T03358',
'T03359',
}
from_kegg_species = TypeDef(
reference=Reference.default('inKeggTaxon', 'in KEGG taxon'),
parents=from_species.reference,
)
@dataclass
class KEGGGenome:
"""A data structure for a parsed line of the KEGG Genomes list."""
identifier: str
name: str
code: Optional[str]
long_code: Optional[str]
taxonomy_id: Optional[str]
def annotate_term(self, term: Term) -> None: