def main():
from docopt import docopt
args = docopt(__doc__, version='ontload .5')
args = {k: None if v == 'None' else v for k, v in args.items()}
setPS1(__file__)
if args['--debug']:
print(args)
try:
run(args)
except NotBuiltError:
if args['--check-built']:
print('Not built')
os.sys.exit(1)
from pyontutils.utils import setPS1
from nifstd_tools.ontree import server
setPS1('ontree')
app = server()
from docopt import parse_defaults
from joblib import Parallel, delayed
from pyontutils.utils import makeGraph, makePrefixes, memoryCheck, noneMembers, TODAY, setPS1, refile # TODO make prefixes needs an all...
from pyontutils.utils import rdf, rdfs, owl, skos, oboInOwl
from pyontutils.hierarchies import creatTree
from collections import namedtuple
from IPython import embed
defaults = {
o.name: o.value if o.argcount else None
for o in parse_defaults(__doc__)
}
COMMIT_HASH_HEAD_LEN = 7
setPS1(__file__)
bigleaves = 'go.owl', 'uberon.owl', 'pr.owl', 'doid.owl', 'taxslim.owl', 'chebislim.ttl', 'ero.owl'
Query = namedtuple('Query', ['root', 'relationshipType', 'direction', 'depth'])
class NotBuiltError(FileNotFoundError):
pass
@contextmanager
def execute_regardless(function, only_exception=False):
try:
yield
except BaseException as e: