def setUp(self) -> None:
setup_server.setup_data()
self.instance = Instance(
a_instance.IDENTIFIER,
Orthanc(setup_server.ORTHANC_URL)
)
def setUp(self) -> None:
setup_server.setup_data()
self.study = Study(
a_study.IDENTIFIER,
Orthanc(setup_server.ORTHANC_URL)
)
def setUp(self) -> None:
self.orthanc = Orthanc(setup_server.ORTHANC_URL)
def setUp(self) -> None:
setup_server.setup_data()
self.series = Series(a_series.IDENTIFIER,
Orthanc(setup_server.ORTHANC_URL))
tqdm.write("Finished Patient %s" % pid)
except Exception as e:
return str(e)
if __name__ == "__main__":
import sys
base_out_dir = "/work/scratch/schock/Temp/FromOrthanc"
valid_ids = ["0000000001"]
series_number_mapping = {"00": "img", "01": "left", "02": "right"}
instance_frame_mapping = {"femur": 0, "tibia": 1}
orthanc = Orthanc("http://orthanc:8043")
orthanc.setup_credentials(sys.argv[1], sys.argv[2]) # If needed
patient_ids = []
tqdm.write("Retrieve Patient IDs")
for study_identifier in orthanc.get_studies():
study_information = orthanc.get_study_information(study_identifier)
study_id = study_information["MainDicomTags"]["StudyID"]
patient_id = study_information["PatientMainDicomTags"]["PatientID"]
if study_id in valid_ids:
# Add Unique Patient ID and Readable (but possibly ambiguous)
# Patient ID
patient_ids.append(
(study_information["ParentPatient"], patient_id))
tqdm.write("Start Processing Patients")
def setUp(self) -> None:
self.orthanc = Orthanc(setup_server.ORTHANC_URL)
self.remote = RemoteModality(self.orthanc, MODALITY)
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
import tkinter as tk
from tkinter import filedialog, ttk
from pathlib import Path
from distutils.dir_util import copy_tree
import subprocess, json, threading, time, datetime, zipfile, os
import concurrent.futures
from pyorthanc import Orthanc
orthanc = Orthanc('http://localhost:8042')
name = "genii"
# helper class for common gui widgets
class Elements:
def __init__(self, master):
self.master = master
# method for all button processes
def button(self, char, funct, lambdaVal, x_, y_, algn, rows):
if lambdaVal == '':
self.b = tk.Button(self.master, text=char, command=funct)
else:
self.b = tk.Button(self.master,
def setUp(self) -> None:
setup_server.setup_data()
self.patient = Patient(a_patient.IDENTIFIER,
Orthanc(setup_server.ORTHANC_URL))
def __init__(self):
self.orthanc = Orthanc(Config.get('pacs_adres'))
self.orthanc.setup_credentials(Config.get('pacs_login'),
Config.get('pacs_password'))