def __init__(self,
filename_in='pyposmat.config.in',
filename_out='pyposmat.results.out',
o_log=None,
mpi_rank=None,
mpi_size=None,
base_directory=None):
"""Additional attributes are set by the base class :obj:PyposmatEngine
Args:
filename_in (str) - path of the configuration file
filename_out (str) - path of the output file
o_log (PyposmatLogFile) - if type(o_log) is a string, then the string is treated as a path in which to log information to. If type(o_log) is PyposmatLogFile then it is set as an attribute for the refernce.
mpi_rank (int)
mpi_size (int)
base_directory (str,optional): Either the relative or full path which provides a
unique drive addressing space for simultaneously running simulations.
Attributes:
mpi_rank (int) - this is passed in
mpi_size (int) - this is passed in
pyposmat_data_in_filename (str) - the path of the datafile to read in
pyposmat_data_out_filename (str) - the path of the datafile to write simulation results to
"""
assert isinstance(filename_in, str)
assert isinstance(filename_out, str)
assert type(base_directory) in [str, type(None)]
PyposmatEngine.__init__(self,
filename_in=filename_in,
filename_out=filename_out,
base_directory=base_directory,
fullauto=False)
if mpi_rank is None:
self.mpi_rank = 0
else:
self.mpi_rank = mpi_rank
if mpi_size is None:
self.mpi_size = 1
else:
self.mpi_size = mpi_size
assert self.mpi_rank < self.mpi_size
self.mpi_rank = mpi_rank
self.mpi_size = mpi_size
self.pyposmat_data_in_filename = None
self.pyposmat_data_out_filename = filename_out
self.pyposmat_badparameters_filename = 'pyposmat.badparameters.out'
try:
self.configure_logger(o_log)
except TypeError as e:
m = "Unable to to configure obj_log based on attribute log:{}".format(
str(o_log))
raise TypeError(m)
def __init__(self,
config_fn='pyposmat.config.in',
data_in_fn='pyposmat.results.in',
data_out_fn='pyposmat.results.out',
mpi_rank = None,
mpi_size=None,
o_log = None,
log_to_stdout=True,
base_directory = None,
fullauto=True):
self.DEBUG = False
self.configuration = None
self.datafile_in = None
self.datafile_out = None
self.mpi_rank = None
self.mpi_size = None
self.qoi_mananger = None
self.task_manager = None
PyposmatEngine.__init__(self,
filename_in=config_fn,
filename_out=data_out_fn,
base_directory=base_directory,
fullauto=fullauto)
self.configuration_fn = config_fn
self.datafile_in_fn = data_in_fn
self.datafile_out_fn = data_out_fn
self.pyposmat_badparameters_filename = 'pyposmat.badparameters.out'
self.configuration = None
self.datafile = None
self.subselect_df = None
self.reference_potentials = None
self.qoi_validation_names = None
self.error_validation_names = None
self.normed_error_validation_names = None
self.qoi_validation_target = None
self.obj_log = None
self.log_to_stdout = None
self.initialize_mpi_information(mpi_rank=mpi_rank,
mpi_size=mpi_size)
self.configure_logger(o_log=o_log,
log_to_stdout=log_to_stdout)
if fullauto is True:
self.read_configuration_file(filename=self.configuration_fn)
self.read_datafile_in(filename=data_in_fn)
self.configure_datafile_out(filename=data_out_fn)