print "Usage: python %s <haxby_dir> <output_dir>" % sys.argv[0]
print ("Example:\r\npython %s ~/CODE/datasets/haxby"
" ~/CODE/FORKED/pypreprocess/haxby_runs") % sys.argv[0]
sys.exit(1)
# set dataset dir
DATA_DIR = sys.argv[1]
# set output dir
OUTPUT_DIR = sys.argv[2]
if not os.path.exists(OUTPUT_DIR):
os.makedirs(OUTPUT_DIR)
# fetch HAXBY dataset
N_SUBJECTS = 5
haxby_data = fetch_haxby(data_dir=DATA_DIR, n_subjects=N_SUBJECTS)
def subject_factory():
"""
Producer for HAXBY subject data.
"""
for subject_id in set([os.path.basename(
os.path.dirname(x))
for x in haxby_data.func]):
# instantiate subject_data object
subject_data = SubjectData()
subject_data.subject_id = subject_id
print(
"Example:\r\npython %s ~/CODE/datasets/haxby"
" ~/CODE/FORKED/pypreprocess/haxby_runs") % sys.argv[0]
sys.exit(1)
# set dataset dir
DATA_DIR = sys.argv[1]
# set output dir
OUTPUT_DIR = sys.argv[2]
if not os.path.exists(OUTPUT_DIR):
os.makedirs(OUTPUT_DIR)
# fetch HAXBY dataset
N_SUBJECTS = 5
haxby_data = fetch_haxby(data_dir=DATA_DIR, n_subjects=N_SUBJECTS)
def subject_factory():
"""
Producer for HAXBY subject data.
"""
for subject_id in set(
[os.path.basename(os.path.dirname(x)) for x in haxby_data.func]):
# instantiate subject_data object
subject_data = SubjectData()
subject_data.subject_id = subject_id
subject_data.session_id = "haxby2001"
inter-stimulus interval. Full-brain fMRI data were recorded with a volume \
repetition time of 2.5s, thus, a stimulus block was covered by roughly 9 \
volumes.
Get full description <a href="http://dev.pymvpa.org/datadb/haxby2001.html">\
here</a>.\
"""
# set output dir
OUTPUT_DIR = "haxby_runs"
if not os.path.exists(OUTPUT_DIR):
os.makedirs(OUTPUT_DIR)
# fetch HAXBY dataset
N_SUBJECTS = 5
haxby_data = fetch_haxby(n_subjects=N_SUBJECTS)
def subject_factory():
"""
Producer for HAXBY subject data.
"""
for subject_id in set([os.path.basename(os.path.dirname(x))
for x in haxby_data.func]):
# instantiate subject_data object
subject_data = SubjectData()
subject_data.subject_id = subject_id
subject_data.session_id = "haxby2001"
