class ReconImagesView(GraphicsLayoutWidget):
def __init__(self, parent):
super().__init__(parent)
self.parent = parent
self.projection, self.projection_vb, self.projection_hist = self.image_in_vb("Projection")
self.sinogram, self.sinogram_vb, self.sinogram_hist = self.image_in_vb("Sinogram")
self.recon, self.recon_vb, self.recon_hist = self.image_in_vb("Recon")
self.slice_line = InfiniteLine(pos=1024, angle=0, bounds=[0, self.projection.width()])
self.projection_vb.addItem(self.slice_line)
self.tilt_line = InfiniteLine(pos=1024, angle=90, pen=(255, 0, 0, 255), movable=True)
image_layout = self.addLayout(colspan=4)
image_layout.addItem(self.projection_vb, 0, 0)
image_layout.addItem(self.projection_hist, 0, 1)
image_layout.addItem(self.recon_vb, 0, 2, rowspan=3)
image_layout.addItem(self.recon_hist, 0, 3, rowspan=3)
projection_details = LabelItem("Value")
image_layout.addItem(projection_details, 1, 0, 1, 2)
image_layout.addItem(self.sinogram_vb, 2, 0)
image_layout.addItem(self.sinogram_hist, 2, 1)
sino_details = LabelItem("Value")
image_layout.addItem(sino_details, 3, 0, 1, 2)
recon_details = LabelItem("Value")
image_layout.addItem(recon_details, 3, 2, 1, 2)
msg_format = "Value: {:.6f}"
self.display_formatted_detail = {
self.projection: lambda val: projection_details.setText(msg_format.format(val)),
self.sinogram: lambda val: sino_details.setText(msg_format.format(val)),
self.recon: lambda val: recon_details.setText(msg_format.format(val))
}
self.projection.hoverEvent = lambda ev: self.mouse_over(ev, self.projection)
self.projection.mouseClickEvent = lambda ev: self.mouse_click(ev, self.slice_line)
self.sinogram.hoverEvent = lambda ev: self.mouse_over(ev, self.sinogram)
self.recon.hoverEvent = lambda ev: self.mouse_over(ev, self.recon)
@staticmethod
def image_in_vb(name=None) -> Tuple[ImageItem, ViewBox, HistogramLUTItem]:
im = ImageItem()
vb = ViewBox(invertY=True, lockAspect=True, name=name)
vb.addItem(im)
hist = HistogramLUTItem(im)
return im, vb, hist
def update_projection(self, image_data: numpy.ndarray, preview_slice_index: int, tilt_angle: Optional[Degrees]):
self.projection.clear()
self.projection.setImage(image_data)
self.projection_hist.imageChanged(autoLevel=True, autoRange=True)
self.slice_line.setPos(preview_slice_index)
if tilt_angle:
self.set_tilt(tilt_angle, image_data.shape[1] // 2)
else:
self.hide_tilt()
def update_sinogram(self, image):
self.sinogram.clear()
self.sinogram.setImage(image)
self.sinogram_hist.imageChanged(autoLevel=True, autoRange=True)
def update_recon(self, image_data, refresh_recon_slice_histogram):
self.recon.clear()
self.recon.setImage(image_data, autoLevels=refresh_recon_slice_histogram)
if refresh_recon_slice_histogram:
self.recon_hist.imageChanged(autoLevel=True, autoRange=True)
def mouse_over(self, ev, img):
# Ignore events triggered by leaving window or right clicking
if ev.exit:
return
pos = CloseEnoughPoint(ev.pos())
if img.image is not None and pos.x < img.image.shape[0] and pos.y < img.image.shape[1]:
pixel_value = img.image[pos.y, pos.x]
self.display_formatted_detail[img](pixel_value)
def mouse_click(self, ev, line: InfiniteLine):
line.setPos(ev.pos())
# don't refresh the histogram on click to stop the contrast for re-adjusting for each slice
# it's much easier to see what's happening to the reconstruction if the slice doesn't
# reset after every click
self.parent.presenter.do_reconstruct_slice(slice_idx=CloseEnoughPoint(ev.pos()).y,
refresh_recon_slice_histogram=False)
def clear_recon(self):
self.recon.clear()
def reset_slice_and_tilt(self, slice_index):
self.slice_line.setPos(slice_index)
self.hide_tilt()
def hide_tilt(self):
"""
Hides the tilt line. This stops infinite zooming out loop that messes up the image view
(the line likes to be unbound when the degree isn't a multiple o 90 - and the tilt never is)
:return:
"""
self.projection_vb.removeItem(self.tilt_line)
def set_tilt(self, tilt: Degrees, pos: Optional[int] = None):
if not isnan(tilt.value): # is isnan it means there is no tilt, i.e. the line is vertical
if pos is not None:
self.tilt_line.setAngle(90)
self.tilt_line.setPos(pos)
self.tilt_line.setAngle(90 + tilt.value)
self.projection_vb.addItem(self.tilt_line)
class ReconImagesView(GraphicsLayoutWidget):
sigSliceIndexChanged = QtCore.pyqtSignal(int)
def __init__(self, parent):
super().__init__(parent)
self.parent = parent
self.imageview_projection = MIMiniImageView(name="Projection")
self.imageview_sinogram = MIMiniImageView(name="Sinogram")
self.imageview_recon = MIMiniImageView(name="Recon")
self.projection, self.projection_vb, self.projection_hist = self.imageview_projection.get_parts(
)
self.sinogram, self.sinogram_vb, self.sinogram_hist = self.imageview_sinogram.get_parts(
)
self.recon, self.recon_vb, self.recon_hist = self.imageview_recon.get_parts(
)
self.slice_line = InfiniteLine(
pos=1024,
angle=0,
bounds=[0, self.imageview_projection.image_item.width()],
movable=True)
self.projection_vb.addItem(self.slice_line)
self.tilt_line = InfiniteLine(pos=1024,
angle=90,
pen=(255, 0, 0, 255),
movable=True)
self.addItem(self.imageview_projection, 0, 0)
self.addItem(self.imageview_recon, 0, 1, rowspan=2)
self.addItem(self.imageview_sinogram, 1, 0)
self.imageview_projection.image_item.mouseClickEvent = lambda ev: self.mouse_click(
ev, self.slice_line)
self.slice_line.sigPositionChangeFinished.connect(
self.slice_line_moved)
# Work around for https://github.com/mantidproject/mantidimaging/issues/565
self.scene().contextMenu = [
item for item in self.scene().contextMenu
if "export" not in item.text().lower()
]
self.imageview_projection.enable_nan_check()
self.imageview_sinogram.enable_nan_check()
self.imageview_recon.enable_nan_check()
self.imageview_projection.enable_nonpositive_check()
self.imageview_sinogram.enable_nonpositive_check()
def slice_line_moved(self):
self.slice_changed(int(self.slice_line.value()))
def update_projection(self, image_data: np.ndarray,
preview_slice_index: int,
tilt_angle: Optional[Degrees]):
self.imageview_projection.clear()
self.imageview_projection.setImage(image_data)
self.projection_hist.imageChanged(autoLevel=True, autoRange=True)
self.slice_line.setPos(preview_slice_index)
if tilt_angle:
self.set_tilt(tilt_angle, image_data.shape[1] // 2)
else:
self.hide_tilt()
set_histogram_log_scale(self.projection_hist)
def update_sinogram(self, image):
self.imageview_sinogram.clear()
self.imageview_sinogram.setImage(image)
self.sinogram_hist.imageChanged(autoLevel=True, autoRange=True)
set_histogram_log_scale(self.sinogram_hist)
def update_recon(self, image_data):
self.imageview_recon.clear()
self.imageview_recon.setImage(image_data, autoLevels=False)
set_histogram_log_scale(self.recon_hist)
def update_recon_hist(self):
self.recon_hist.imageChanged(autoLevel=True, autoRange=True)
def mouse_click(self, ev, line: InfiniteLine):
line.setPos(ev.pos())
self.slice_changed(CloseEnoughPoint(ev.pos()).y)
def slice_changed(self, slice_index):
self.parent.presenter.do_preview_reconstruct_slice(
slice_idx=slice_index)
self.sigSliceIndexChanged.emit(slice_index)
def clear_recon(self):
self.imageview_recon.clear()
def reset_slice_and_tilt(self, slice_index):
self.slice_line.setPos(slice_index)
self.hide_tilt()
def hide_tilt(self):
"""
Hides the tilt line. This stops infinite zooming out loop that messes up the image view
(the line likes to be unbound when the degree isn't a multiple o 90 - and the tilt never is)
:return:
"""
if self.tilt_line.scene() is not None:
self.projection_vb.removeItem(self.tilt_line)
def set_tilt(self, tilt: Degrees, pos: Optional[int] = None):
if not isnan(
tilt.value
): # is isnan it means there is no tilt, i.e. the line is vertical
if pos is not None:
self.tilt_line.setAngle(90)
self.tilt_line.setPos(pos)
self.tilt_line.setAngle(90 + tilt.value)
self.projection_vb.addItem(self.tilt_line)
def reset_recon_histogram(self):
self.recon_hist.autoHistogramRange()
