def pore_bind_rule_name(rule_expression, size):
# Get ReactionPatterns
react_p = rule_expression.reactant_pattern
prod_p = rule_expression.product_pattern
# Build the label components
# Pore is always first complex of LHS due to how we build the rules
subunit = react_p.complex_patterns[0].monomer_patterns[0].monomer
if len(react_p.complex_patterns) == 2:
# This is the complexation reaction
cargo = react_p.complex_patterns[1].monomer_patterns[0]
else:
# This is the dissociation reaction
cargo = prod_p.complex_patterns[1].monomer_patterns[0]
return '%s_%d_%s' % (subunit.name, size,
macros._monomer_pattern_label(cargo))
def pore_bind_rule_name(rule_expression, size):
# Get ReactionPatterns
react_p = rule_expression.reactant_pattern
prod_p = rule_expression.product_pattern
# Build the label components
# Pore is always first complex of LHS due to how we build the rules
subunit = react_p.complex_patterns[0].monomer_patterns[0].monomer
if len(react_p.complex_patterns) == 2:
# This is the complexation reaction
cargo = react_p.complex_patterns[1].monomer_patterns[0]
else:
# This is the dissociation reaction
cargo = prod_p.complex_patterns[1].monomer_patterns[0]
return '%s_%d_%s' % (subunit.name, size,
macros._monomer_pattern_label(cargo))
def pore_rule_name(rule_expression):
react_p = rule_expression.reactant_pattern
mp = react_p.complex_patterns[0].monomer_patterns[0]
subunit_name = macros._monomer_pattern_label(mp)
pore_name = mp.monomer.name
return '%s_to_%s%d' % (subunit_name, mp.monomer.name, 4)
def pore_rule_name(rule_expression):
react_p = rule_expression.reactant_pattern
mp = react_p.complex_patterns[0].monomer_patterns[0]
subunit_name = macros._monomer_pattern_label(mp)
pore_name = mp.monomer.name
return '%s_to_%s%d' % (subunit_name, mp.monomer.name, 4)