def check_param_reader(config_num):
"""
tests initialize_uvdata_from_params
"""
param_filename = param_filenames[config_num]
hera_uv = UVData()
hera_uv.read_uvfits(triangle_uvfits_file)
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
sources = np.array([create_zenith_source(time, 'zensrc')])
beam0 = UVBeam()
beam0.read_beamfits(herabeam_default)
beam1 = pyuvsim.AnalyticBeam('tophat')
beam2 = pyuvsim.AnalyticBeam('gaussian', sigma=0.02)
beam_list = [beam0, beam1, beam2]
beam_dict = {'ANT1': 0, 'ANT2': 1, 'ANT3': 2}
expected_uvtask_list = pyuvsim.uvdata_to_task_list(hera_uv,
sources,
beam_list,
beam_dict=beam_dict)
# Check default configuration
uv_obj, new_beam_list, new_beam_dict, beam_ids = pyuvsim.initialize_uvdata_from_params(
param_filename)
uvtask_list = pyuvsim.uvdata_to_task_list(uv_obj,
sources,
new_beam_list,
beam_dict=new_beam_dict)
# Tasks are not ordered in UVTask lists, so need to sort them.
# This is enabled by the comparison operator in UVTask
uvtask_list = sorted(uvtask_list)
expected_uvtask_list = sorted(expected_uvtask_list)
for ti in xrange(len(expected_uvtask_list)):
print uvtask_list[ti].baseline.antenna1.beam_id, expected_uvtask_list[
ti].baseline.antenna1.beam_id
print uvtask_list[ti].baseline.antenna2.beam_id, expected_uvtask_list[
ti].baseline.antenna2.beam_id
print uvtask_list[ti].baseline.antenna1.number, expected_uvtask_list[
ti].baseline.antenna1.number
print uvtask_list[ti].baseline.antenna2.number, expected_uvtask_list[
ti].baseline.antenna2.number
print uvtask_list[ti].baseline.antenna1.name, expected_uvtask_list[
ti].baseline.antenna1.name
print uvtask_list[ti].baseline.antenna2.name, expected_uvtask_list[
ti].baseline.antenna2.name
print uvtask_list[ti].freq - expected_uvtask_list[ti].freq
print uvtask_list[ti].time - expected_uvtask_list[ti].time
print uvtask_list[ti].uvdata_index, expected_uvtask_list[
ti].uvdata_index
print '\n'
nt.assert_true(uvtask_list == expected_uvtask_list)
def test_comparison():
"""
Beam __eq__ method
"""
beam1 = pyuvsim.AnalyticBeam('uniform')
beam2 = pyuvsim.AnalyticBeam('gaussian', sigma=0.02)
beam2.type = 'undefined'
not_beam = UVData()
assert beam1 != not_beam
assert beam2 != beam1
def test_achromatic_gaussian_beam(heratext_posfreq):
sigma_rad = Angle('5d').to_value('rad')
beam = pyuvsim.AnalyticBeam('gaussian', sigma=sigma_rad)
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
az_vals, za_vals, freq_vals = heratext_posfreq
nsrcs = az_vals.size
n_freqs = freq_vals.size
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array(az_vals),
za_array=np.array(za_vals),
freq_array=np.array(freq_vals))
expected_data = np.zeros((2, 1, 2, n_freqs, nsrcs), dtype=np.float)
interp_zas = np.zeros((n_freqs, nsrcs), dtype=np.float)
for f_ind in range(n_freqs):
interp_zas[f_ind, :] = np.array(za_vals)
gaussian_vals = np.exp(-(interp_zas**2) / (2 * sigma_rad**2))
expected_data[1, 0, 0, :, :] = gaussian_vals
expected_data[0, 0, 1, :, :] = gaussian_vals
assert np.allclose(interpolated_beam, expected_data)
def test_diameter_to_sigma():
# The integrals of an Airy power beam and a Gaussian power beam, within
# the first Airy null, should be close if the Gaussian width is set to the Airy width.
diameter_m = 25.0
abm = pyuvsim.AnalyticBeam('airy', diameter=diameter_m)
gbm = pyuvsim.AnalyticBeam('gaussian', diameter=diameter_m)
Nfreqs = 20
freq_vals = np.linspace(100e6, 130e6, Nfreqs)
lams = c_ms / freq_vals
N = 250
Npix = 501
zmax = np.radians(40) # Degrees
zas = np.linspace(-zmax, zmax, Npix)
azs = np.array([0.0] * (N + 1) + [np.pi] * N)
shape = (
2,
1,
2,
Nfreqs,
) + azs.shape
airy_vals, interp_basis_vector = abm.interp(az_array=azs.flatten(),
za_array=zas.flatten(),
freq_array=freq_vals)
gauss_vals, interp_basis_vector = gbm.interp(az_array=azs.flatten(),
za_array=zas.flatten(),
freq_array=freq_vals)
airy_vals = airy_vals.reshape(shape)
gauss_vals = gauss_vals.reshape(shape)
airy_vals = airy_vals[0, 0, 0] * airy_vals[0, 0, 1]
gauss_vals = gauss_vals[0, 0, 0] * gauss_vals[
0, 0, 1] # Remove pol/spw/feed axes. Make power beam.
for fi in range(Nfreqs):
null = 1.22 * lams[fi] / diameter_m
inds = np.where(np.abs(zas) < null)
# Assert integral of power beams within the first Airy null are close
assert np.isclose(np.sum(airy_vals[fi, inds]),
np.sum(gauss_vals[fi, inds]),
rtol=1e-2)
def test_power_analytic_beam():
# Check that power beam evaluation matches electric field amp**2 for analytic beams.
freqs = np.arange(120e6, 160e6, 4e6)
Npix = 1000
diam = 14.0
az = np.zeros(Npix)
za = np.linspace(0, np.pi / 2., Npix)
for b in ['gaussian', 'uniform', 'airy']:
eb = pyuvsim.AnalyticBeam(b, diameter=diam)
pb = pyuvsim.AnalyticBeam(b, diameter=diam)
pb.efield_to_power()
evals = eb.interp(az, za, freqs)[0][0, 0, 1]
pvals = pb.interp(az, za, freqs)[0][0, 0, 0]
assert np.allclose(evals**2, pvals)
# Ensure uniform beam works
pb = pyuvsim.AnalyticBeam('uniform')
pb.efield_to_power()
pb.interp(az, za, freqs)
def test_gaussbeam_values():
"""
Make the long-line point sources up to 10 degrees from zenith.
Obtain visibilities
Confirm that the values match the expected beam values at those zenith angles.
"""
sigma = 0.05
hera_uv = UVData()
hera_uv.read_uvfits(EW_uvfits_file)
array_location = EarthLocation.from_geocentric(
hera_uv.telescope_location[0],
hera_uv.telescope_location[1],
hera_uv.telescope_location[2],
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
catalog, mock_keywords = pyuvsim.create_mock_catalog(
time=time,
arrangement='long-line',
Nsrcs=41,
max_za=10.,
array_location=array_location)
beam = pyuvsim.AnalyticBeam('gaussian', sigma=sigma)
array = pyuvsim.Telescope('telescope_name', array_location, [beam])
# Need a dummy baseline for this test.
antenna1 = pyuvsim.Antenna('ant1', 1, np.array([0, 0, 0]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array([107, 0, 0]), 0)
baseline = pyuvsim.Baseline(antenna1, antenna2)
coherencies = []
zenith_angles = []
for src in catalog:
task = pyuvsim.UVTask(src, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
engine.apply_beam()
# task.source.az_za_calc(time, array_location)
zenith_angles.append(task.source.az_za[1]) # In radians.
coherencies.append(
np.real(engine.apparent_coherency[0, 0]).astype(
float)) # All four components should be identical
coherencies = np.array(coherencies)
zenith_angles = np.array(zenith_angles)
# Confirm the coherency values (ie., brightnesses) match the beam values.
beam_values = np.exp(-(zenith_angles)**2 / (2 * beam.sigma**2))
nt.assert_true(np.all(beam_values**2 == coherencies))
def test_gaussbeam_values():
"""
Make the long-line point sources up to 10 degrees from zenith.
Confirm that the coherencies match the expected beam values at those zenith angles.
"""
sigma = 0.05
hera_uv = UVData()
hera_uv.read_uvfits(EW_uvfits_file)
array_location = EarthLocation.from_geocentric(*hera_uv.telescope_location,
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
catalog, mock_keywords = pyuvsim.create_mock_catalog(
time=time,
arrangement='long-line',
Nsrcs=41,
min_alt=80.,
array_location=array_location)
catalog.update_positions(time, array_location)
beam = pyuvsim.AnalyticBeam('gaussian', sigma=sigma)
array = pyuvsim.Telescope('telescope_name', array_location, [beam])
# Need a dummy baseline for this test.
antenna1 = pyuvsim.Antenna('ant1', 1, np.array([0, 0, 0]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array([107, 0, 0]), 0)
baseline = pyuvsim.Baseline(antenna1, antenna2)
task = pyuvsim.UVTask(catalog, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
engine.apply_beam()
altitudes = task.sources.alt_az[0] # In radians.
# All four components should be identical
if isinstance(engine.apparent_coherency, units.Quantity):
coherency_use = engine.apparent_coherency.to_value("Jy")
else:
coherency_use = engine.apparent_coherency
coherencies = np.real(coherency_use[0, 0] +
coherency_use[1, 1]).astype(float)
zenith_angles, _ = simutils.altaz_to_zenithangle_azimuth(
altitudes, np.zeros_like(np.array(altitudes)))
# Confirm the coherency values (ie., brightnesses) match the beam values.
beam_values = np.exp(-(zenith_angles)**2 / (2 * beam.sigma**2))
assert np.all(beam_values**2 == coherencies)
def test_beamerrs():
"""
Error cases.
"""
with pytest.raises(ValueError, match='type not recognized'):
pyuvsim.AnalyticBeam('unsupported_type')
beam = pyuvsim.AnalyticBeam('gaussian')
az, za = np.random.uniform(0.0, np.pi, (2, 5))
freq_arr = np.linspace(1e8, 1.5e8, 10)
with pytest.raises(ValueError,
match='Dish diameter needed for gaussian beam'):
beam.interp(az, za, freq_arr)
beam.type = 'airy'
with pytest.raises(ValueError, match='Dish diameter needed for airy beam'):
beam.interp(az, za, freq_arr)
beam.type = 'noninterpolable'
with pytest.raises(ValueError,
match='no interp for this type: noninterpolable'):
beam.interp(az, za, freq_arr)
def beam_objs():
uvb = UVBeam()
uvb.read_beamfits(herabeam_default)
uvb.extra_keywords['beam_path'] = herabeam_default
uvb2 = UVBeam()
uvb2.read_beamfits(herabeam_default)
uvb2.extra_keywords['beam_path'] = herabeam_default
beams = [uvb, uvb2]
beams.append(pyuvsim.AnalyticBeam('uniform'))
diameter_m = 14.
beams.append(pyuvsim.AnalyticBeam('airy', diameter=diameter_m))
sigma = 0.03
beams.append(pyuvsim.AnalyticBeam('gaussian', sigma=sigma))
ref_freq, alpha = 100e6, -0.5
beams.append(
pyuvsim.AnalyticBeam('gaussian',
sigma=sigma,
ref_freq=ref_freq,
spectral_index=alpha))
return beams
def test_gaussian_beam():
sigma_rad = Angle('5d').to('rad').value
beam = pyuvsim.AnalyticBeam('gaussian', sigma=sigma_rad)
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
time = Time('2018-03-01 00:00:00', scale='utc')
array_location = EarthLocation(lat='-30d43m17.5s',
lon='21d25m41.9s',
height=1073.)
source_list, mock_keywords = pyuvsim.create_mock_catalog(
time, 'hera_text', array_location=array_location)
nsrcs = len(source_list)
az_vals = []
za_vals = []
freq_vals = []
for src in source_list:
src_coord = SkyCoord(ra=src.ra,
dec=src.dec,
frame='icrs',
obstime=time,
location=array_location)
src_coord_altaz = src_coord.transform_to('altaz')
az_vals.append(src_coord_altaz.az.to('rad').value)
za_vals.append((Angle('90d') - src_coord_altaz.alt).to('rad').value)
if len(freq_vals) > 0:
if src.freq.to('Hz').value != freq_vals[0]:
freq_vals.append(src.freq.to('Hz').value)
else:
freq_vals.append(src.freq.to('Hz').value)
n_freqs = len(freq_vals)
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array(az_vals),
za_array=np.array(za_vals),
freq_array=np.array(freq_vals))
expected_data = np.zeros((2, 1, 2, n_freqs, nsrcs), dtype=np.float)
interp_zas = np.zeros((n_freqs, nsrcs), dtype=np.float)
for f_ind in range(n_freqs):
interp_zas[f_ind, :] = np.array(za_vals)
gaussian_vals = np.exp(-(interp_zas**2) / (2 * sigma_rad**2))
expected_data[1, 0, 0, :, :] = gaussian_vals
expected_data[0, 0, 1, :, :] = gaussian_vals
expected_data[1, 0, 1, :, :] = gaussian_vals
expected_data[0, 0, 0, :, :] = gaussian_vals
nt.assert_true(np.allclose(interpolated_beam, expected_data))
def test_chromatic_gaussian():
"""
test_chromatic_gaussian
Defining a gaussian beam with a spectral index and reference frequency.
Check that beam width follows prescribed power law.
"""
freqs = np.arange(120e6, 160e6, 4e6)
Nfreqs = len(freqs)
Npix = 1000
alpha = -1.5
sigma = np.radians(15.0)
az = np.zeros(Npix)
za = np.linspace(0, np.pi / 2., Npix)
# Error if trying to define chromatic beam without a reference frequency
with pytest.raises(
ValueError,
match=
'ref_freq must be set for nonzero gaussian beam spectral index'):
pyuvsim.AnalyticBeam('gaussian', sigma=sigma, spectral_index=alpha)
A = pyuvsim.AnalyticBeam('gaussian',
sigma=sigma,
ref_freq=freqs[0],
spectral_index=alpha)
# Get the widths at each frequency.
vals, _ = A.interp(az, za, freqs)
vals = vals[0, 0, 1]
for fi in range(Nfreqs):
hwhm = za[np.argmin(np.abs(vals[fi] - 0.5))]
sig_f = sigma * (freqs[fi] / freqs[0])**alpha
assert np.isclose(sig_f, 2 * hwhm / 2.355, atol=1e-3)
def test_uniform_beam(heratext_posfreq):
beam = pyuvsim.AnalyticBeam('uniform')
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
az_vals, za_vals, freqs = heratext_posfreq
nsrcs = az_vals.size
n_freqs = freqs.size
interpolated_beam, interp_basis_vector = beam.interp(az_array=az_vals,
za_array=za_vals,
freq_array=freqs)
expected_data = np.zeros((2, 1, 2, n_freqs, nsrcs), dtype=np.float)
expected_data[1, 0, 0, :, :] = 1
expected_data[0, 0, 1, :, :] = 1
assert np.allclose(interpolated_beam, expected_data)
def test_uv_beam_widths():
# Check that the width of the Airy disk beam in UV space corresponds with the dish diameter.
diameter_m = 25.0
beam = pyuvsim.AnalyticBeam('airy', diameter=diameter_m)
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
Nfreqs = 20
freq_vals = np.linspace(100e6, 130e6, Nfreqs)
lams = c_ms / freq_vals
N = 250
Npix = 500
zmax = np.radians(90) # Degrees
arr = np.arange(-N, N)
x, y = np.meshgrid(arr, arr)
r = np.sqrt(x**2 + y**2) / float(N)
zas = r * zmax
azs = np.arctan2(y, x)
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array(azs),
za_array=np.array(zas),
freq_array=np.array(freq_vals))
ebeam = interpolated_beam[0, 0, 1, :, :]
ebeam = ebeam.reshape(Nfreqs, Npix, Npix)
beam_kern = np.fft.fft2(ebeam, axes=(1, 2))
beam_kern = np.fft.fftshift(beam_kern, axes=(1, 2))
for i, bk in enumerate(beam_kern):
# Cutoff at half a % of the maximum value in Fourier space.
thresh = np.max(np.abs(bk)) * 0.005
points = np.sum(np.abs(bk) >= thresh)
upix = 1 / (2 * np.sin(zmax)
) # 2*sin(zmax) = fov extent projected onto the xy plane
area = np.sum(points) * upix**2
kern_radius = np.sqrt(area / np.pi)
assert np.isclose(diameter_m / lams[i], kern_radius, rtol=0.5)
def test_airy_beam_values(heratext_posfreq):
diameter_m = 14.
beam = pyuvsim.AnalyticBeam('airy', diameter=diameter_m)
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
az_vals, za_vals, freq_vals = heratext_posfreq
interpolated_beam, interp_basis_vector = beam.interp(az_array=az_vals,
za_array=za_vals,
freq_array=freq_vals)
expected_data = np.zeros((2, 1, 2, 1, az_vals.size), dtype=np.float)
za_grid, f_grid = np.meshgrid(za_vals, freq_vals)
xvals = diameter_m / 2. * np.sin(za_grid) * 2. * np.pi * f_grid / c_ms
airy_values = np.zeros_like(xvals)
nz = xvals != 0.
ze = xvals == 0.
airy_values[nz] = 2. * j1(xvals[nz]) / xvals[nz]
airy_values[ze] = 1.
expected_data[1, 0, 0, :, :] = airy_values
expected_data[0, 0, 1, :, :] = airy_values
assert np.allclose(interpolated_beam, expected_data)
def test_offzenith_source_multibl_uvfits():
"""Test single off-zenith source using test uvdata file.
Calculate visibilities for a baseline triangle.
"""
hera_uv = UVData()
hera_uv.read_uvfits(
longbl_uvfits_file, ant_str='cross'
) # consists of a right triangle of baselines with w term
hera_uv.unphase_to_drift()
src_az = Angle('90.0d')
src_alt = Angle('85.0d')
src_za = Angle('90.0d') - src_alt
src_l = np.sin(src_az.rad) * np.sin(src_za.rad)
src_m = np.cos(src_az.rad) * np.sin(src_za.rad)
src_n = np.cos(src_za.rad)
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
array_location = EarthLocation.from_geocentric(
hera_uv.telescope_location[0],
hera_uv.telescope_location[1],
hera_uv.telescope_location[2],
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
# get antennas positions into ENU
antpos, ants = hera_uv.get_ENU_antpos()
antenna1 = pyuvsim.Antenna('ant1', ants[0], np.array(antpos[0, :]), 0)
antenna2 = pyuvsim.Antenna('ant2', ants[1], np.array(antpos[1, :]), 0)
antenna3 = pyuvsim.Antenna('ant3', ants[2], np.array(antpos[2, :]), 0)
# setup the things that don't come from pyuvdata:
# make a source off zenith
time.location = array_location
source = create_offzenith_source(time, 'offzensrc', az=src_az, alt=src_alt)
# beam = UVBeam()
# beam.read_cst_beam(beam_files, beam_type='efield', frequency=[100e6, 123e6],
# telescope_name='HERA',
# feed_name='PAPER', feed_version='0.1', feed_pol=['x'],
# model_name='E-field pattern - Rigging height 4.9m',
# model_version='1.0')
beam = pyuvsim.AnalyticBeam('tophat')
beam_list = [beam]
baselines = [
pyuvsim.Baseline(antenna2, antenna1),
pyuvsim.Baseline(antenna3, antenna1),
pyuvsim.Baseline(antenna3, antenna2)
]
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
tasks = [pyuvsim.UVTask(source, time, freq, bl, array) for bl in baselines]
visibilities = []
uvws = []
for t in tasks:
engine = pyuvsim.UVEngine(t)
visibilities.append(engine.make_visibility())
uvws.append(t.baseline.uvw)
uvws = np.array(uvws)
# analytically calculate visibilities
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array([src_az.rad]),
za_array=np.array([src_za.rad]),
freq_array=np.array([freq.to('Hz').value]))
jones = np.zeros((2, 2), dtype=np.complex64)
jones[0, 0] = interpolated_beam[1, 0, 0, 0, 0]
jones[1, 1] = interpolated_beam[0, 0, 1, 0, 0]
jones[1, 0] = interpolated_beam[1, 0, 1, 0, 0]
jones[0, 1] = interpolated_beam[0, 0, 0, 0, 0]
uvw_wavelength_array = hera_uv.uvw_array[
0:hera_uv.Nbls] * units.m / const.c * freq.to('1/s')
visibilities_analytic = []
for u, v, w in uvw_wavelength_array:
vis = 0.5 * np.dot(
jones,
np.conj(jones).T) * np.exp(2j * np.pi *
(u * src_l + v * src_m + w * src_n))
visibilities_analytic.append(
np.array([vis[0, 0], vis[1, 1], vis[1, 0], vis[0, 1]]))
print('pyuvsim uvws: ', np.around(uvws))
print('file uvws: ', np.around(hera_uv.uvw_array[0:hera_uv.Nbls]))
print('Difference: ', uvws - hera_uv.uvw_array[0:hera_uv.Nbls])
# the file used different phasing code than the test uses -- increase the tolerance
nt.assert_true(
np.allclose(uvws, hera_uv.uvw_array[0:hera_uv.Nbls], atol=1e-4))
print('Analytic visibility', visibilities_analytic)
print('Calculated visibility', visibilities)
print(np.array(visibilities) - np.array(visibilities_analytic))
# the file used different phasing code than the test uses -- increase the tolerance
nt.assert_true(np.allclose(visibilities, visibilities_analytic, atol=1e-4))
for filename in args.file_in:
if rank == 0:
print("Reading:", os.path.basename(filename))
input_uv = UVData()
input_uv.read_uvfits(filename, read_data=False)
time0 = input_uv.time_array[0]
input_uv.read_uvfits(filename, freq_chans=0, times=time0)
# beam = UVBeam()
# beam.read_cst_beam(beam_files, beam_type='efield', frequency=[150e6],
# telescope_name='HERA',
# feed_name='PAPER', feed_version='0.1', feed_pol=['x'],
# model_name='E-field pattern - Rigging height 4.9m',
# model_version='1.0')
beam = pyuvsim.AnalyticBeam('gaussian', sigma=0.0222)
beam_list = [beam]
extra_keywords = {
'obs_param_file': 'uvfits_file=' + os.path.basename(filename),
'telescope_config_file': beam.type,
'antenna_location_file': os.path.basename(filename)
}
input_uv.extra_keywords = extra_keywords
mock_keywords = {}
mock_keywords['save'] = args.save_catalog
mock_keywords['max_za'] = args.save_catalog
mock_keywords['arrangement'] = args.mock_arrangement
uvdata_out = pyuvsim.uvsim.run_uvsim(input_uv,
beam_list=beam_list,
def test_param_reader():
pytest.importorskip('mpi4py')
# Reading in various configuration files
param_filename = os.path.join(SIM_DATA_PATH, "test_config", "param_10time_10chan_0.yaml")
hera_uv = UVData()
hera_uv.read_uvfits(triangle_uvfits_file)
hera_uv.unphase_to_drift()
hera_uv.telescope_name = 'HERA'
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
sources, _ = pyuvsim.create_mock_catalog(time, arrangement='zenith', return_data=True)
beam0 = UVBeam()
beam0.read_beamfits(herabeam_default)
beam0.extra_keywords['beam_path'] = herabeam_default
beam1 = pyuvsim.AnalyticBeam('uniform')
beam2 = pyuvsim.AnalyticBeam('gaussian', sigma=0.02)
beam3 = pyuvsim.AnalyticBeam('airy', diameter=14.6)
beam_list = pyuvsim.BeamList([beam0, beam1, beam2, beam3])
# To fill out other parameters in the UVBeam.
beam_list.set_str_mode()
beam_list.set_obj_mode()
beam_dict = {'ANT1': 0, 'ANT2': 1, 'ANT3': 2, 'ANT4': 3}
# Error conditions:
params_bad = pyuvsim.simsetup._config_str_to_dict(param_filename)
bak_params_bad = copy.deepcopy(params_bad)
# Missing config file info
params_bad['config_path'] = os.path.join(
SIM_DATA_PATH, 'nonexistent_directory', 'nonexistent_file'
)
with pytest.raises(ValueError, match="nonexistent_directory is not a directory"):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
params_bad['config_path'] = os.path.join(SIM_DATA_PATH, "test_config")
params_bad['telescope']['array_layout'] = 'nonexistent_file'
with pytest.raises(ValueError, match="nonexistent_file from yaml does not exist"):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
params_bad['telescope']['telescope_config_name'] = 'nonexistent_file'
with pytest.raises(ValueError, match="telescope_config_name file from yaml does not exist"):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
# Missing beam keywords
params_bad = copy.deepcopy(bak_params_bad)
params_bad['config_path'] = os.path.join(SIM_DATA_PATH, "test_config")
params_bad = copy.deepcopy(bak_params_bad)
params_bad['telescope']['telescope_config_name'] = os.path.join(
SIM_DATA_PATH, 'test_config', '28m_triangle_10time_10chan_gaussnoshape.yaml'
)
with pytest.raises(KeyError,
match="Missing shape parameter for gaussian beam"):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
params_bad['telescope']['telescope_config_name'] = os.path.join(
SIM_DATA_PATH, 'test_config', '28m_triangle_10time_10chan_nodiameter.yaml'
)
with pytest.raises(KeyError, match="Missing diameter for airy beam."):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
params_bad['telescope']['telescope_config_name'] = os.path.join(
SIM_DATA_PATH, 'test_config', '28m_triangle_10time_10chan_nofile.yaml'
)
with pytest.raises(ValueError, match="Undefined beam model"):
pyuvsim.simsetup.initialize_uvdata_from_params(params_bad)
# Check default configuration
uv_obj, new_beam_list, new_beam_dict = pyuvsim.initialize_uvdata_from_params(param_filename)
new_beam_list.set_obj_mode()
pyuvsim.simsetup._complete_uvdata(uv_obj, inplace=True)
with open(param_filename, 'r') as fhandle:
param_dict = yaml.safe_load(fhandle)
expected_ofilepath = pyuvsim.utils.write_uvdata(
uv_obj, param_dict, return_filename=True, dryrun=True
)
assert './sim_results.uvfits' == expected_ofilepath
# Spoof attributes that won't match.
uv_obj.antenna_names = uv_obj.antenna_names.tolist()
uv_obj.antenna_diameters = hera_uv.antenna_diameters
uv_obj.history = hera_uv.history
uvfits_required_extra = [
"_antenna_positions",
"_gst0",
"_rdate",
"_earth_omega",
"_dut1",
"_timesys",
]
for attr in uvfits_required_extra:
param = getattr(uv_obj, attr)
if param.value is None:
param.value = param.spoof_val
setattr(uv_obj, attr, param)
assert new_beam_dict == beam_dict
assert new_beam_list == beam_list
assert uv_obj == hera_uv