if options.overlap:
overlap = options.overlap
assert len_infs % overlap== 0, "the num of keys ({0}) are not even to do overlap ({1})".format(
len_infs, overlap)
row, col = q_acc.det_row_col(len_infs / overlap, options.morer)
else:
overlap = 1
row, col = q_acc.det_row_col(len_infs, options.morer)
fig = plt.figure(figsize=(24,11))
# row, col = q_acc.det_row_col(len(data.keys()))
for k, key in enumerate(data.keys()):
if k % overlap == 0:
ax = fig.add_subplot(row, col, k / overlap + 1)
# ax = fig.add_subplot(row,col,k+1)
print len(x), len(data[key]), key
ax.plot(x, data[key], label=key)
ax.set_title(key)
ax.grid(b=True)
# ax.set_ylim([-180, 180])
q_acc.show_or_save(options.of)
if __name__ == '__main__':
import time; b=time.time()
outline(q_acc.parse_cmd())
e = time.time()
print "TIME ELAPSED: %f" % (e - b)
if mysys:
# need further modification to choose color in terms of solute or solvent
group = re.compile('sq[1-9][wmepov]\d{3,4}s[0-9][0-9]').search(inf).group()
seq = group[:3]
color = mysys[seq].color
marker = mysys[seq].marker
legend = mysys[seq].seq
else:
color = None # specified by matplotlib automatically
marker = None
key = inf # use the file name as a key
# collection of x & y will be used to determine the xlim & ylim
x, y = ax_plot(inf, ax, legend, color, marker, options.eb)
axes.append(ax)
keys.append(key)
xs[key], ys[key] = x, y
blegend, xlb, ylb, xb, yb, xe, ye = (options.blegend, options.xlb, options.ylb,
options.xb, options.yb, options.xe, options.ye)
q_acc.decorate(keys, xs, ys, axes, blegend, xlb, ylb, xb, yb, xe, ye)
q_acc.show_or_save(options.of)
if __name__ == '__main__':
import time
b=time.time()
options = q_acc.parse_cmd()
main(options)
e = time.time()
print e - b
(ave_xp, std_xp, ave_yp, std_yp) = (
np.average(xf_data), np.std(xf_data), np.average(yf_data), np.std(yf_data))
ave_change = (ave_yp-ave_xp) / ave_xp
std_change = error_change(ave_xp, std_xp, ave_yp, std_yp)
if not k1 in change.keys():
change[k1] = {}
change[k1][k2] = [ave_change, std_change]
return change
# print "%-30s%-10.2f%-30s%-10.2f%10.2f" % (xf, ave_xp, yf, ave_yp, (ave_yp-ave_xp)/ave_xp)n
# return ave_xp, std_xp, ave_yp, std_yp
def outline(options):
pwd = os.environ['PWD']
dir_template = re.compile('g_rg|u[pn][u][pn]|u[pn]vp')
dirs = [ d for d in os.listdir(pwd) if dir_template.search(d) and os.path.isdir(d) ]
assert len(dirs) > 0
xfs , yfs = [], []
for d in dirs:
xfs.extend(sorted(glob.glob(os.path.join(d, 'sq[1-6]w*'))))
yfs.extend(sorted(glob.glob(os.path.join(d, 'sq[1-6]m*'))))
assert len(xfs) == len(yfs), 'the number of files of xfs & yfs are not the same\n {0}\n {1}'.format(xfs, yfs)
change = {}
for xf, yf in zip(xfs,yfs):
change = quantify_ave_change(xf,yf,change)
pretty_output(change)
if __name__ == "__main__":
outline(parse_cmd())
# print error_change(1.3, 0.2, 0.9, 0.1)
