def parameters(self) -> str:
if self.pristine:
psnames = [ps.name for ps in self.description.interdeps.paramspecs]
return ','.join(psnames)
else:
return select_one_where(self.conn, "runs", "parameters", "run_id",
self.run_id)
def snapshot_raw(self) -> Optional[str]:
"""Snapshot of the run as a JSON-formatted string (or None)"""
if is_column_in_table(self.conn, "runs", "snapshot"):
return select_one_where(self.conn, "runs", "snapshot", "run_id",
self.run_id)
else:
return None
def _get_run_description_from_db(self) -> RunDescriber:
"""
Look up the run_description from the database
"""
desc_str = select_one_where(self.conn, "runs", "run_description",
"run_id", self.run_id)
return RunDescriber.from_json(desc_str)
def fix_wrong_run_descriptions(conn: ConnectionPlus,
run_ids: Sequence[int]) -> None:
"""
NB: This is a FIX function. Do not use it unless your database has been
diagnosed with the problem that this function fixes.
Overwrite faulty run_descriptions by using information from the layouts and
dependencies tables. If a correct description is found for a run, that
run is left untouched.
Args:
conn: The connection to the database
run_ids: The runs to (potentially) fix
"""
user_version = get_user_version(conn)
if not user_version == 3:
raise RuntimeError('Database of wrong version. Will not apply fix. '
'Expected version 3, found version {user_version}')
log.info('[*] Fixing run descriptions...')
for run_id in run_ids:
trusted_paramspecs = get_parameters(conn, run_id)
trusted_desc = RunDescriber(interdeps=InterDependencies(
*trusted_paramspecs))
actual_desc_str = select_one_where(conn, "runs", "run_description",
"run_id", run_id)
if actual_desc_str == trusted_desc.to_json():
log.info(f'[+] Run id: {run_id} had an OK description')
else:
log.info(f'[-] Run id: {run_id} had a broken description. '
f'Description found: {actual_desc_str}')
update_run_description(conn, run_id, trusted_desc.to_json())
log.info(f' Run id: {run_id} has been updated.')
def exp_id(self) -> int:
return select_one_where(self.conn, "runs",
"exp_id", "run_id", self.run_id)
def parameters(self) -> str:
return select_one_where(self.conn, "runs",
"parameters", "run_id", self.run_id)
def counter(self):
return select_one_where(self.conn, "runs",
"result_counter", "run_id", self.run_id)
def table_name(self):
return select_one_where(self.conn, "runs",
"result_table_name", "run_id", self.run_id)
def name(self):
return select_one_where(self.conn, "runs",
"name", "run_id", self.run_id)
def finished_at(self) -> int:
return select_one_where(self.conn, "experiments", "exp_id", "end_time",
self.exp_id)
def started_at(self) -> int:
return select_one_where(self.conn, "experiments", "exp_id",
"start_time", self.exp_id)
def sample_name(self) -> str:
return select_one_where(self.conn, "experiments", "sample_name",
"exp_id", self.exp_id)
def format_string(self) -> str:
return select_one_where(self.conn, "experiments", "format_string",
"exp_id", self.exp_id)
def snapshot_raw(self) -> Optional[str]:
"""Snapshot of the run as a JSON-formatted string (or None)"""
return select_one_where(self.conn, "runs", "snapshot",
"run_id", self.run_id)
