def test_make_HTML_table(self):
"""make_HTML_table should Make HTML tables for one set charts"""
#test pie charts
fracs_labels_other,fracs_labels,all_counts,other_cat,red,other_frac = \
get_fracs(self.counts1,5,10,'pie')
img_data = make_HTML_table("Phylum",other_frac,10,red,other_cat,\
fracs_labels_other,fracs_labels,\
self.dir_path,all_counts,1,self.prefs,\
self.color_prefs,'black','white','pie',\
'Test1',\
self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,0,\
'categorical',False,False)
self.assertEqual(len(img_data),2)
#test area charts
fracs_labels_other,fracs_labels,all_counts,other_cat,red,other_frac = \
get_fracs(self.counts1,5,10,'area')
img_data = make_HTML_table("Phylum",other_frac,10,red,other_cat,\
fracs_labels_other,fracs_labels,\
self.dir_path,all_counts,1,self.prefs,\
self.color_prefs,'black','white','pie',\
'Test1',\
self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,0,\
'categorical',False,False)
self.assertEqual(len(img_data),2)
#test bar charts
fracs_labels_other,fracs_labels,all_counts,other_cat,red,other_frac = \
get_fracs(self.counts1,5,10,'bar')
img_data = make_HTML_table("Phylum",other_frac,10,red,other_cat,\
fracs_labels_other,fracs_labels,\
self.dir_path,all_counts,1,self.prefs,\
self.color_prefs,'black','white','pie',\
'Test1',\
self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,0,\
'categorical',False,False)
self.assertEqual(len(img_data),2)
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/"+f \
for f in listdir("/tmp/qiimewebfiles/charts")]
def test_make_HTML_table(self):
"""make_HTML_table should Make HTML tables for one set charts"""
# test pie charts
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 5, 10, "pie")
img_data = make_HTML_table(
"Phylum",
other_frac,
10,
red,
other_cat,
fracs_labels_other,
fracs_labels,
self.dir_path,
all_counts,
1,
self.prefs,
self.color_prefs,
"black",
"white",
"pie",
"Test1",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 2)
# test area charts
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(
self.counts1, 5, 10, "area"
)
img_data = make_HTML_table(
"Phylum",
other_frac,
10,
red,
other_cat,
fracs_labels_other,
fracs_labels,
self.dir_path,
all_counts,
1,
self.prefs,
self.color_prefs,
"black",
"white",
"pie",
"Test1",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 2)
# test bar charts
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 5, 10, "bar")
img_data = make_HTML_table(
"Phylum",
other_frac,
10,
red,
other_cat,
fracs_labels_other,
fracs_labels,
self.dir_path,
all_counts,
1,
self.prefs,
self.color_prefs,
"black",
"white",
"pie",
"Test1",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 2)
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/" + f for f in listdir("/tmp/qiimewebfiles/charts")]
def test_get_fracs(self):
""""get_fracs should Return fractions for matplotlib chart"""
#test the pie charts
exp_all_counts=[DATA_HTML%("4",(4.0/10)*100,'a<br>g','h', 'h',"a;g;h"),\
DATA_HTML%('3',(3.0/10)*100,'d<br>e','f', 'f',"d;e;f"),\
DATA_HTML%('2',(2.0/10)*100,'d<br>e','i', 'i',"d;e;i"),\
DATA_HTML%('1',(1.0/10)*100,'a<br>b','c', 'c',"a;b;c")]
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,5,10,'pie')
self.assertEqual(fracs_labels_other,[("a;b;c",1.0/10),("a;g;h",4.0/10),\
("d;e;f",3.0/10),("d;e;i",2.0/10)])
self.assertEqual(fracs_labels,[])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,0)
self.assertEqual(red,10)
self.assertEqual(other_frac,0)
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,3,10,'pie')
self.assertEqual(fracs_labels_other,[("a;g;h",4.0/10),("d;e;f",3.0/10)])
self.assertEqual(fracs_labels,[("a;g;h",4.0/7),("d;e;f",3.0/7)])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,2)
self.assertEqual(red,7)
self.assertEqual(other_frac,3.0/10)
#test the area charts
exp_all_counts=['4', '3', '2', '1']
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,5,10,'area')
self.assertEqual(fracs_labels_other,[("a;b;c",1.0/10),("a;g;h",4.0/10),\
("d;e;f",3.0/10),("d;e;i",2.0/10)])
self.assertEqual(fracs_labels,[])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,0)
self.assertEqual(red,10)
self.assertEqual(other_frac,0)
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,3,10,'area')
self.assertEqual(fracs_labels_other,[("a;g;h",4.0/10),("d;e;f",3.0/10),\
('d;e;i',2.0/10)])
self.assertEqual(fracs_labels,[("a;g;h",8.0/18),("d;e;f",6.0/18)])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,2)
self.assertEqual(red,9)
self.assertEqual(other_frac,3.0/10)
#test bar charts
exp_all_counts=['4', '3', '2', '1']
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,5,10,'bar')
self.assertEqual(fracs_labels_other,[("a;b;c",1.0/10),("a;g;h",4.0/10),\
("d;e;f",3.0/10),("d;e;i",2.0/10)])
self.assertEqual(fracs_labels,[])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,0)
self.assertEqual(red,10)
self.assertEqual(other_frac,0)
fracs_labels_other,fracs_labels,all_counts, other_cat, red,other_frac \
= get_fracs(self.counts1,3,10,'bar')
self.assertEqual(fracs_labels_other,[("a;g;h",4.0/10),("d;e;f",3.0/10),\
('d;e;i',2.0/10)])
self.assertEqual(fracs_labels,[("a;g;h",8.0/18),("d;e;f",6.0/18)])
self.assertEqual(all_counts,exp_all_counts)
self.assertEqual(other_cat,2)
self.assertEqual(red,9)
self.assertEqual(other_frac,3.0/10)
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/"+f \
for f in listdir("/tmp/qiimewebfiles/charts")]
def test_get_fracs(self):
""""get_fracs should Return fractions for matplotlib chart"""
# test the pie charts
exp_all_counts = [
DATA_HTML % ((4.0 / 10) * 100.0, "a<br>g", "h", "h", "a;g;h"),
DATA_HTML % ((3.0 / 10) * 100, "d<br>e", "f", "f", "d;e;f"),
DATA_HTML % ((2.0 / 10) * 100, "d<br>e", "i", "i", "d;e;i"),
DATA_HTML % ((1.0 / 10) * 100, "a<br>b", "c", "c", "a;b;c"),
]
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 5, 10, "pie")
self.assertEqual(
fracs_labels_other, [("a;b;c", 1.0 / 10), ("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10), ("d;e;i", 2.0 / 10)]
)
self.assertEqual(fracs_labels, [])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 0)
self.assertEqual(red, 10)
self.assertEqual(other_frac, 0)
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 3, 10, "pie")
self.assertEqual(fracs_labels_other, [("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10)])
self.assertEqual(fracs_labels, [("a;g;h", 4.0 / 7), ("d;e;f", 3.0 / 7)])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 2)
self.assertEqual(red, 7)
self.assertEqual(other_frac, 3.0 / 10)
# test the area charts
exp_all_counts = ["4", "3", "2", "1"]
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(
self.counts1, 5, 10, "area"
)
self.assertEqual(
fracs_labels_other, [("a;b;c", 1.0 / 10), ("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10), ("d;e;i", 2.0 / 10)]
)
self.assertEqual(fracs_labels, [])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 0)
self.assertEqual(red, 10)
self.assertEqual(other_frac, 0)
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(
self.counts1, 3, 10, "area"
)
self.assertEqual(fracs_labels_other, [("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10), ("d;e;i", 2.0 / 10)])
self.assertEqual(fracs_labels, [("a;g;h", 8.0 / 18), ("d;e;f", 6.0 / 18)])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 2)
self.assertEqual(red, 9)
self.assertEqual(other_frac, 3.0 / 10)
# test bar charts
exp_all_counts = ["4", "3", "2", "1"]
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 5, 10, "bar")
self.assertEqual(
fracs_labels_other, [("a;b;c", 1.0 / 10), ("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10), ("d;e;i", 2.0 / 10)]
)
self.assertEqual(fracs_labels, [])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 0)
self.assertEqual(red, 10)
self.assertEqual(other_frac, 0)
fracs_labels_other, fracs_labels, all_counts, other_cat, red, other_frac = get_fracs(self.counts1, 3, 10, "bar")
self.assertEqual(fracs_labels_other, [("a;g;h", 4.0 / 10), ("d;e;f", 3.0 / 10), ("d;e;i", 2.0 / 10)])
self.assertEqual(fracs_labels, [("a;g;h", 8.0 / 18), ("d;e;f", 6.0 / 18)])
self.assertEqual(all_counts, exp_all_counts)
self.assertEqual(other_cat, 2)
self.assertEqual(red, 9)
self.assertEqual(other_frac, 3.0 / 10)
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/" + f for f in listdir("/tmp/qiimewebfiles/charts")]