def test_generate_deblur_workflow_commands(self):
exp = ('deblur workflow --seqs-fp "fastq/s1.fastq" --output-dir '
'"output" --error-dist "1, 0.06, 0.02, 0.02, 0.01, '
'0.005, 0.005, 0.005, 0.001, 0.001, 0.001, 0.0005" '
'--indel-max "3" --indel-prob "0.01" --jobs-to-start "1" '
'--mean-error "0.005" --min-reads "0" --min-size "2" '
'--threads-per-sample "1" '
'--trim-length "100"')
obs = generate_deblur_workflow_commands(
['fastq/s1.fastq'], 'output', self.params)
self.assertEqual(obs, exp)
def test_generate_deblur_workflow_commands_error(self):
with self.assertRaises(ValueError):
generate_deblur_workflow_commands(
['fastq/s1.fastq', 'fastq/s1.fastq'],
'output', self.params)
