def __init__(self, parent=None):
super(SymmetrySimplerParamTab, self).__init__()
hbox_d_min = QHBoxLayout()
localLayout = QVBoxLayout()
label_d_min = QLabel("d_min")
hbox_d_min.addWidget(label_d_min)
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "d_min"
d_min_spn_bx.setSpecialValueText("Auto")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout.addLayout(hbox_d_min)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = []
self.lst_var_widg.append(d_min_spn_bx)
self.lst_var_widg.append(label_d_min)
def __init__(self, parent=None):
super(IntegrateSimplerParamTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
localLayout = QVBoxLayout()
PrFit_lay_out = QHBoxLayout()
label_PrFit = QLabel("Use profile fitting")
PrFit_lay_out.addWidget(label_PrFit)
PrFit_comb_bx = DefaultComboBox("integration.profile.fitting",
["True", "False", "Auto"])
PrFit_comb_bx.currentIndexChanged.connect(self.combobox_changed)
PrFit_lay_out.addWidget(PrFit_comb_bx)
localLayout.addLayout(PrFit_lay_out)
hbox_lay_algorithm_53 = QHBoxLayout()
label_algorithm_53 = QLabel("Background algorithm")
hbox_lay_algorithm_53.addWidget(label_algorithm_53)
box_algorithm_53 = DefaultComboBox(
"integration.background.algorithm",
["simple", "null", "median", "gmodel", "glm"],
default_index=4)
box_algorithm_53.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_algorithm_53.addWidget(box_algorithm_53)
localLayout.addLayout(hbox_lay_algorithm_53)
hbox_d_min = QHBoxLayout()
label_d_min = QLabel("High resolution limit")
hbox_d_min.addWidget(label_d_min)
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "prediction.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.editingFinished.connect(self.spnbox_finished)
localLayout.addLayout(hbox_d_min)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of jobs")
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "integration.mp.nproc"
self.box_nproc.editingFinished.connect(self.spnbox_finished)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.box_nproc.tmp_lst = None
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
def __init__(self, phl_obj=None, parent=None):
super(IndexSimplerParamTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
# indexing_method_check = QCheckBox("indexing.method")
hbox_method = QHBoxLayout()
label_method_62 = QLabel("Indexing method")
hbox_method.addWidget(label_method_62)
box_method_62 = DefaultComboBox(
"indexing.method",
["fft3d", "fft1d", "real_space_grid_search", "low_res_spot_match"])
box_method_62.currentIndexChanged.connect(self.combobox_changed)
hbox_method.addWidget(box_method_62)
max_cell_label = QLabel("Max cell")
max_cell_spn_bx = QDoubleSpinBox()
max_cell_spn_bx.setSingleStep(5.0)
max_cell_spn_bx.local_path = "indexing.max_cell"
max_cell_spn_bx.setSpecialValueText("Auto")
max_cell_spn_bx.editingFinished.connect(self.spnbox_finished)
space_group_label = QLabel("Space group")
space_group_line = QLineEdit()
# Simple validator to allow only characters in H-M symbols
regex = QRegExp("[ABCPIFR][0-9a-d\-/:nmHR]+")
validatorHM = QRegExpValidator(regex)
space_group_line.setValidator(validatorHM)
space_group_line.local_path = "indexing.known_symmetry.space_group"
space_group_line.editingFinished.connect(self.line_changed)
unit_cell_label = QLabel("Unit cell")
unit_cell_line = QLineEdit()
regex = QRegExp("[0-9\., ]+")
validatorUC = QRegExpValidator(regex)
unit_cell_line.setValidator(validatorUC)
unit_cell_line.local_path = "indexing.known_symmetry.unit_cell"
unit_cell_line.editingFinished.connect(self.line_changed)
localLayout = QVBoxLayout()
localLayout.addLayout(hbox_method)
qf = QFormLayout()
qf.addRow(max_cell_label, max_cell_spn_bx)
qf.addRow(space_group_label, space_group_line)
qf.addRow(unit_cell_label, unit_cell_line)
localLayout.addLayout(qf)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
def __init__(self, parent=None):
super(ScaleSimplerParamTab, self).__init__()
localLayout = QVBoxLayout()
hbox_lay_mod = QHBoxLayout()
label_mod = QLabel("Model")
hbox_lay_mod.addWidget(label_mod)
box_mod = DefaultComboBox("model", ["physical", "array", "KB"])
box_mod.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_mod.addWidget(box_mod)
hbox_lay_wgh_opt_err = QHBoxLayout()
label_wgh_opt_err = QLabel("Error optimisation model")
hbox_lay_wgh_opt_err.addWidget(label_wgh_opt_err)
box_wgh_opt_err = DefaultComboBox("weighting.error_model.error_model",
["basic", "None"])
box_wgh_opt_err.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_wgh_opt_err.addWidget(box_wgh_opt_err)
"""
weighting {
error_model {
error_model = *basic None
"""
hbox_d_min = QHBoxLayout()
d_min_label = QLabel("High resolution limit")
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "cut_data.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_label)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.editingFinished.connect(self.spnbox_finished)
localLayout.addLayout(hbox_lay_mod)
localLayout.addLayout(hbox_lay_wgh_opt_err)
localLayout.addLayout(hbox_d_min)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = []
self.lst_var_widg.append(box_mod)
self.lst_var_widg.append(label_mod)
self.lst_var_widg.append(box_wgh_opt_err)
self.lst_var_widg.append(label_wgh_opt_err)
self.lst_var_widg.append(d_min_spn_bx)
self.lst_var_widg.append(d_min_label)
def __init__(self, parent=None):
super(ScaleSimplerParamTab, self).__init__()
localLayout = QVBoxLayout()
hbox_lay_mod = QHBoxLayout()
label_mod = QLabel("Model")
hbox_lay_mod.addWidget(label_mod)
box_mod = QComboBox()
box_mod.local_path = "model"
box_mod.tmp_lst = []
box_mod.tmp_lst.append("physical")
box_mod.tmp_lst.append("array")
box_mod.tmp_lst.append("KB")
for lst_itm in box_mod.tmp_lst:
box_mod.addItem(lst_itm)
box_mod.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_mod.addWidget(box_mod)
hbox_lay_wgh_opt_err = QHBoxLayout()
label_wgh_opt_err = QLabel("Optimise Errors Model")
hbox_lay_wgh_opt_err.addWidget(label_wgh_opt_err)
'''
weighting {
error_model {
error_model = *basic None
'''
box_wgh_opt_err = QComboBox()
box_wgh_opt_err.local_path = "weighting.error_model.error_model"
box_wgh_opt_err.tmp_lst = []
box_wgh_opt_err.tmp_lst.append("basic")
box_wgh_opt_err.tmp_lst.append("None")
for lst_itm in box_wgh_opt_err.tmp_lst:
box_wgh_opt_err.addItem(lst_itm)
box_wgh_opt_err.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_wgh_opt_err.addWidget(box_wgh_opt_err)
hbox_d_min = QHBoxLayout()
d_min_label = QLabel("d_min")
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "cut_data.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_label)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout.addLayout(hbox_lay_mod)
localLayout.addLayout(hbox_lay_wgh_opt_err)
localLayout.addLayout(hbox_d_min)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = []
self.lst_var_widg.append(box_mod)
self.lst_var_widg.append(label_mod)
self.lst_var_widg.append(box_wgh_opt_err)
self.lst_var_widg.append(label_wgh_opt_err)
self.lst_var_widg.append(d_min_spn_bx)
self.lst_var_widg.append(d_min_label)
def __init__(self, parent=None):
super(IntegrateSimplerParamTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
localLayout = QVBoxLayout()
PrFit_lay_out = QHBoxLayout()
label_PrFit = QLabel("Use Profile Fitting")
PrFit_lay_out.addWidget(label_PrFit)
PrFit_comb_bx = QComboBox()
PrFit_comb_bx.local_path = "integration.profile.fitting"
PrFit_comb_bx.tmp_lst = []
PrFit_comb_bx.tmp_lst.append("True")
PrFit_comb_bx.tmp_lst.append("False")
PrFit_comb_bx.tmp_lst.append("Auto")
for lst_itm in PrFit_comb_bx.tmp_lst:
PrFit_comb_bx.addItem(lst_itm)
PrFit_comb_bx.currentIndexChanged.connect(self.combobox_changed)
PrFit_lay_out.addWidget(PrFit_comb_bx)
localLayout.addLayout(PrFit_lay_out)
hbox_lay_algorithm_53 = QHBoxLayout()
label_algorithm_53 = QLabel("Background Algorithm")
hbox_lay_algorithm_53.addWidget(label_algorithm_53)
box_algorithm_53 = QComboBox()
box_algorithm_53.local_path = "integration.background.algorithm"
box_algorithm_53.tmp_lst = []
box_algorithm_53.tmp_lst.append("simple")
box_algorithm_53.tmp_lst.append("null")
box_algorithm_53.tmp_lst.append("median")
box_algorithm_53.tmp_lst.append("gmodel")
box_algorithm_53.tmp_lst.append("glm")
for lst_itm in box_algorithm_53.tmp_lst:
box_algorithm_53.addItem(lst_itm)
box_algorithm_53.setCurrentIndex(4)
box_algorithm_53.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_algorithm_53.addWidget(box_algorithm_53)
localLayout.addLayout(hbox_lay_algorithm_53)
hbox_d_min = QHBoxLayout()
label_d_min = QLabel("d_min")
hbox_d_min.addWidget(label_d_min)
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "prediction.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout.addLayout(hbox_d_min)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of Jobs")
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "integration.mp.nproc"
self.box_nproc.valueChanged.connect(self.spnbox_changed)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.box_nproc.tmp_lst = None
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
def __init__(self, parent=None):
super(FindspotsSimplerParameterTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
#TODO thinks about making "None equivalent to 1"
xds_gain_label = QLabel("Gain")
xds_gain_spn_bx = QDoubleSpinBox()
xds_gain_spn_bx.local_path = "spotfinder.threshold.dispersion.gain"
xds_gain_spn_bx.setSpecialValueText("None")
xds_gain_spn_bx.setValue(1.0)
xds_gain_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_sigma_background_label = QLabel("Sigma Background")
xds_sigma_background_spn_bx = QDoubleSpinBox()
xds_sigma_background_spn_bx.setValue(6.0)
xds_sigma_background_spn_bx.local_path = (
"spotfinder.threshold.dispersion.sigma_background")
xds_sigma_background_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_sigma_strong_label = QLabel("Sigma Strong")
xds_sigma_strong_spn_bx = QDoubleSpinBox()
xds_sigma_strong_spn_bx.setValue(3.0)
xds_sigma_strong_spn_bx.local_path = (
"spotfinder.threshold.dispersion.sigma_strong")
xds_sigma_strong_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_global_threshold_label = QLabel("Global Threshold")
xds_global_threshold_spn_bx = QDoubleSpinBox()
xds_global_threshold_spn_bx.local_path = (
"spotfinder.threshold.dispersion.global_threshold")
xds_global_threshold_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout = QVBoxLayout()
xds_gain_hb = QHBoxLayout()
xds_gain_hb.addWidget(xds_gain_label)
xds_gain_hb.addWidget(xds_gain_spn_bx)
localLayout.addLayout(xds_gain_hb)
xds_sigma_background_hb = QHBoxLayout()
xds_sigma_background_hb.addWidget(xds_sigma_background_label)
xds_sigma_background_hb.addWidget(xds_sigma_background_spn_bx)
localLayout.addLayout(xds_sigma_background_hb)
xds_sigma_strong_hb = QHBoxLayout()
xds_sigma_strong_hb.addWidget(xds_sigma_strong_label)
xds_sigma_strong_hb.addWidget(xds_sigma_strong_spn_bx)
localLayout.addLayout(xds_sigma_strong_hb)
xds_global_threshold_hb = QHBoxLayout()
xds_global_threshold_hb.addWidget(xds_global_threshold_label)
xds_global_threshold_hb.addWidget(xds_global_threshold_spn_bx)
localLayout.addLayout(xds_global_threshold_hb)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of Jobs")
# label_nproc.setPalette(palette_object)
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "spotfinder.mp.nproc"
self.box_nproc.valueChanged.connect(self.spnbox_changed)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)