def make_default_setup(date, plan, project=None):
if not project:
project = get_validation_project()
plan_name = plan.get('name', None) or plate_layouts[plan['plate_layout']][1]
plate_setup = PlateSetup(project_id=project.id, name=plan_name)
plate_setup.locked = False
plate_setup.completed = False
if type(plan['execution_order']) == type([]):
execution_order = plan['execution_order']
else:
execution_order = execution_orders[plan['execution_order']]
# TODO add status steps
setup = dict(consumable=consumable_layouts[plan['consumable']],
execution_order=execution_order,
plate_layout=plate_layouts[plan['plate_layout']],
progress=progress(num_readers=len(execution_order)))
plate_setup.time_updated = datetime.now()
plate_setup.author_id = plan['operator'].id
plate_setup.setup = json.dumps(setup)
plate_setup.dr_oil = 22
plate_setup.dg_oil = 14
plate_setup.master_mix = 12
plate_setup.droplet_generation_method = 201
plate_setup.thermal_cycler_id = plan.get('thermal_cycler', None)
plate_setup.prefix = make_setup_name(plate_setup)
return plate_setup
def generate_production_setups(dr, operator, weekdays_ahead=0, day_of_week_override=None):
date_str = weekdays_ahead_date(weekdays_ahead).strftime('%m-%d')
project = get_validation_project()
carryover_plate_setup = PlateSetup(project_id=project.id,
name="%s_Carryover%s" % (date_str, dr.code[1:]),
locked=False,
completed=False,
time_updated=datetime.now(),
author_id=operator.id,
dr_oil=22,
dg_oil=14,
master_mix=12,
droplet_generation_method=201)
carryover_plate_setup.setup = json.dumps(
dict(consumable=consumable_layouts['standard'],
plate_layout=plate_layouts['prod'],
execution_order=[dr.name],
progress=progress(num_readers=1))
)
carryover_plate_setup.prefix = make_setup_name(carryover_plate_setup)
colorcomp_plate_setup = PlateSetup(project_id=project.id,
name="%s_ColorComp%s" % (date_str, dr.code[1:]),
locked=False,
completed=False,
time_updated=datetime.now(),
author_id=operator.id,
dr_oil=22,
dg_oil=14,
master_mix=12,
droplet_generation_method=201)
colorcomp_plate_setup.setup = json.dumps(
dict(consumable=consumable_layouts['half'],
plate_layout=plate_layouts['colorcomp'],
execution_order=[dr.name, dr.name, dr.name, dr.name, dr.name, dr.name, dr.name, dr.name],
progress=progress(num_readers=8))
)
colorcomp_plate_setup.prefix = make_setup_name(colorcomp_plate_setup)
return carryover_plate_setup, colorcomp_plate_setup
