def main(): args = get_args() # setup logging log, my_name = setup_logging(args) all_bams = get_all_bams(args.input_dir, args.follow_links) sample = os.path.basename(args.input_dir) picard.merge_many_bams(log, sample, all_bams, args.output_dir) # end text = " Completed {} ".format(my_name) log.info(text.center(65, "="))