def create_unittest_components(model, flux, applypb=False, telescope='LOW', npixel=None, scale=1.0, single=False, symmetric=False, angular_scale=1.0): # Fill the visibility with exactly computed point sources. if npixel is None: _, _, _, npixel = model.data.shape spacing_pixels = int(scale * npixel) // 4 log.info('Spacing in pixels = %s' % spacing_pixels) if not symmetric: centers = [(0.2 * angular_scale, 1.1 * angular_scale)] else: centers = list() if not single: centers.append([0.0, 0.0]) for x in numpy.linspace(-1.2 * angular_scale, 1.2 * angular_scale, 7): if abs(x) > 1e-15: centers.append([x, x]) centers.append([x, -x]) model_pol = model.polarisation_frame # Make the list of components rpix = model.wcs.wcs.crpix components = [] for center in centers: ix, iy = center # The phase center in 0-relative coordinates is n // 2 so we centre the grid of # components on ny // 2, nx // 2. The wcs must be defined consistently. p = int(round(rpix[0] + ix * spacing_pixels * numpy.sign(model.wcs.wcs.cdelt[0]))), \ int(round(rpix[1] + iy * spacing_pixels * numpy.sign(model.wcs.wcs.cdelt[1]))) sc = pixel_to_skycoord(p[0], p[1], model.wcs, origin=1) log.info("Component at (%f, %f) [0-rel] %s" % (p[0], p[1], str(sc))) # Channel images comp = create_skycomponent(direction=sc, flux=flux, frequency=model.frequency, polarisation_frame=model_pol) components.append(comp) if applypb: beam = create_pb(model, telescope=telescope, use_local=False) components = apply_beam_to_skycomponent(components, beam) return components
def test_create_primary_beams_RADEC(self): self.createVis() for telescope in ['VLA', 'ASKAP', 'MID', 'LOW']: model = create_image_from_visibility(self.vis, cellsize=self.cellsize, npixel=self.npixel, override_cellsize=False) beam = create_pb(model, telescope=telescope, use_local=False) assert numpy.max(beam.data) > 0.0 if self.persist: export_image_to_fits( beam, "%s/test_primary_beam_RADEC_%s.fits" % (self.dir, telescope))
def test_apply_primary_beam_imageplane(self): self.createVis() telescope = 'MID' lflux = numpy.array([[100.0, 1.0, -10.0, +60.0]]) cflux = numpy.array([[100.0, 60.0, -10.0, +1.0]]) apply_pb = True for flux, vpol in ((lflux, PolarisationFrame("linear")), (cflux, PolarisationFrame("circular"))): # print("Testing {0}".format(vpol.type)) # print("Original flux = {}".format(flux)) bvis = create_blockvisibility( self.config, self.times, self.frequency, channel_bandwidth=self.channel_bandwidth, phasecentre=self.phasecentre, weight=1.0, polarisation_frame=vpol, zerow=True) component_centre = SkyCoord(ra=+15.5 * u.deg, dec=-35.0 * u.deg, frame='icrs', equinox='J2000') component = create_skycomponent( direction=component_centre, flux=flux, frequency=self.frequency, polarisation_frame=PolarisationFrame("stokesIQUV")) model = create_image_from_visibility( bvis, cellsize=self.cellsize, npixel=self.npixel, override_cellsize=False, polarisation_frame=PolarisationFrame("stokesIQUV")) pb = create_pb(model, telescope=telescope, use_local=False) if apply_pb: pbcomp = apply_beam_to_skycomponent(component, pb) # print("After application of primary beam {}".format(str(pbcomp.flux))) else: pbcomp = copy_skycomponent(component) bvis = dft_skycomponent_visibility(bvis, pbcomp) iquv_image = idft_visibility_skycomponent(bvis, component)[0]
def create_simulation_components(context, phasecentre, frequency, pbtype, offset_dir, flux_limit, pbradius, pb_npixel, pb_cellsize, show=False): """ Construct components for simulation :param context: :param phasecentre: :param frequency: :param pbtype: :param offset_dir: :param flux_limit: :param pbradius: :param pb_npixel: :param pb_cellsize: :return: """ HWHM_deg, null_az_deg, null_el_deg = find_pb_width_null(pbtype, frequency) dec = phasecentre.dec.deg ra = phasecentre.ra.deg if context == 'singlesource': log.info("create_simulation_components: Constructing single component") offset = [HWHM_deg * offset_dir[0], HWHM_deg * offset_dir[1]] log.info( "create_simulation_components: Offset from pointing centre = %.3f, %.3f deg" % (offset[0], offset[1])) # The point source is offset to approximately the halfpower point offset_direction = SkyCoord( ra=(ra + offset[0] / numpy.cos(numpy.pi * dec / 180.0)) * units.deg, dec=(dec + offset[1]) * units.deg, frame='icrs', equinox='J2000') original_components = [ Skycomponent(flux=[[1.0]], direction=offset_direction, frequency=frequency, polarisation_frame=PolarisationFrame('stokesI')) ] elif context == 'null': log.info( "create_simulation_components: Constructing single component at the null" ) offset = [null_az_deg * offset_dir[0], null_el_deg * offset_dir[1]] HWHM = HWHM_deg * numpy.pi / 180.0 log.info( "create_simulation_components: Offset from pointing centre = %.3f, %.3f deg" % (offset[0], offset[1])) # The point source is offset to approximately the null point offset_direction = SkyCoord( ra=(ra + offset[0] / numpy.cos(numpy.pi * dec / 180.0)) * units.deg, dec=(dec + offset[1]) * units.deg, frame='icrs', equinox='J2000') original_components = [ Skycomponent(flux=[[1.0]], direction=offset_direction, frequency=frequency, polarisation_frame=PolarisationFrame('stokesI')) ] else: offset = [0.0, 0.0] # Make a skymodel from S3 max_flux = 0.0 total_flux = 0.0 log.info("create_simulation_components: Constructing s3sky components") from rascil.processing_components.simulation import create_test_skycomponents_from_s3 original_components = create_test_skycomponents_from_s3( flux_limit=flux_limit / 100.0, phasecentre=phasecentre, polarisation_frame=PolarisationFrame("stokesI"), frequency=numpy.array(frequency), radius=pbradius) log.info( "create_simulation_components: %d components before application of primary beam" % (len(original_components))) pbmodel = create_image(npixel=pb_npixel, cellsize=pb_cellsize, phasecentre=phasecentre, frequency=frequency, polarisation_frame=PolarisationFrame("stokesI")) pb = create_pb(pbmodel, "MID_GAUSS", pointingcentre=phasecentre, use_local=False) pb_feko = create_pb(pbmodel, pbtype, pointingcentre=phasecentre, use_local=True) pb.data = pb_feko.data[:, 0, ...][:, numpy.newaxis, ...] pb_applied_components = [ copy_skycomponent(c) for c in original_components ] pb_applied_components = apply_beam_to_skycomponent( pb_applied_components, pb) filtered_components = [] for icomp, comp in enumerate(pb_applied_components): if comp.flux[0, 0] > flux_limit: total_flux += comp.flux[0, 0] if abs(comp.flux[0, 0]) > max_flux: max_flux = abs(comp.flux[0, 0]) filtered_components.append(original_components[icomp]) log.info( "create_simulation_components: %d components > %.3f Jy after application of primary beam" % (len(filtered_components), flux_limit)) log.info( "create_simulation_components: Strongest components is %g (Jy)" % max_flux) log.info( "create_simulation_components: Total flux in components is %g (Jy)" % total_flux) original_components = [ copy_skycomponent(c) for c in filtered_components ] if show: plt.clf() show_image(pb, components=original_components) plt.show(block=False) log.info("create_simulation_components: Created %d components" % len(original_components)) # Primary beam points to the phasecentre offset_direction = SkyCoord(ra=ra * units.deg, dec=dec * units.deg, frame='icrs', equinox='J2000') return original_components, offset_direction
print("%d components before application of primary beam" % (len(original_components))) pbmodel = rsexecute.execute(create_image_from_visibility)( vis_list0, npixel=pb_npixel, cellsize=pb_cellsize, override_cellsize=False, phasecentre=phasecentre, frequency=frequency, nchan=nfreqwin, polarisation_frame=PolarisationFrame("stokesI")) pbmodel = rsexecute.compute(pbmodel, sync=True) # Use MID_GAUSS to filter the components since MID_GRASP is in local coordinates pb = create_pb(pbmodel, "MID_GAUSS", pointingcentre=phasecentre, use_local=False) pb_applied_components = [ copy_skycomponent(c) for c in original_components ] pb_applied_components = apply_beam_to_skycomponent( pb_applied_components, pb) filtered_components = [] for icomp, comp in enumerate(pb_applied_components): if comp.flux[0, 0] > flux_limit: total_flux += comp.flux[0, 0] if abs(comp.flux[0, 0]) > max_flux: max_flux = abs(comp.flux[0, 0]) filtered_components.append(original_components[icomp]) print("%d components > %.3f Jy after application of primary beam" % (len(filtered_components), flux_limit))
def create_simulation_components( context, phasecentre, frequency, pbtype, offset_dir, flux_limit, pbradius, pb_npixel, pb_cellsize, show=False, fov=10, polarisation_frame=PolarisationFrame("stokesI"), filter_by_primary_beam=True, flux_max=10.0): """ Construct components for simulation :param context: singlesource or null or s3sky :param phasecentre: Centre of components :param frequency: Frequency :param pbtype: Type of primary beam :param offset_dir: Offset in ra, dec degrees :param flux_limit: Lower limit flux :param pbradius: Radius of components in radians :param pb_npixel: Number of pixels in the primary beam model :param pb_cellsize: Cellsize in primary beam model :param fov: FOV in degrees (used to select catalog) :param flux_max: Maximum flux in model before application of primary beam :param filter_by_primary_beam: Filter components by primary beam :param polarisation_frame: :param show: :return: """ HWHM_deg, null_az_deg, null_el_deg = find_pb_width_null(pbtype, frequency) dec = phasecentre.dec.deg ra = phasecentre.ra.deg if context == 'singlesource': log.info("create_simulation_components: Constructing single component") offset = [HWHM_deg * offset_dir[0], HWHM_deg * offset_dir[1]] log.info( "create_simulation_components: Offset from pointing centre = %.3f, %.3f deg" % (offset[0], offset[1])) # The point source is offset to approximately the halfpower point odirection = SkyCoord( ra=(ra + offset[0] / numpy.cos(numpy.pi * dec / 180.0)) * units.deg, dec=(dec + offset[1]) * units.deg, frame='icrs', equinox='J2000') if polarisation_frame.type == "stokesIQUV": original_components = [ Skycomponent( flux=[[1.0, 0.0, 0.0, 0.0]], direction=odirection, frequency=frequency, polarisation_frame=PolarisationFrame('stokesIQUV')) ] else: original_components = [ Skycomponent(flux=[[1.0]], direction=odirection, frequency=frequency, polarisation_frame=PolarisationFrame('stokesI')) ] offset_direction = odirection elif context == 'doublesource': original_components = [] log.info( "create_simulation_components: Constructing double components") for sign_offset in [(-1, 0), (1, 0)]: offset = [HWHM_deg * sign_offset[0], HWHM_deg * sign_offset[1]] log.info( "create_simulation_components: Offset from pointing centre = %.3f, %.3f deg" % (offset[0], offset[1])) odirection = SkyCoord( ra=(ra + offset[0] / numpy.cos(numpy.pi * dec / 180.0)) * units.deg, dec=(dec + offset[1]) * units.deg, frame='icrs', equinox='J2000') if polarisation_frame.type == "stokesIQUV": original_components.append( Skycomponent( flux=[[1.0, 0.0, 0.0, 0.0]], direction=odirection, frequency=frequency, polarisation_frame=PolarisationFrame('stokesIQUV'))) else: original_components.append( Skycomponent( flux=[[1.0]], direction=odirection, frequency=frequency, polarisation_frame=PolarisationFrame('stokesI'))) for o in original_components: print(o) offset_direction = odirection elif context == 'null': log.info( "create_simulation_components: Constructing single component at the null" ) offset = [null_az_deg * offset_dir[0], null_el_deg * offset_dir[1]] HWHM = HWHM_deg * numpy.pi / 180.0 log.info( "create_simulation_components: Offset from pointing centre = %.3f, %.3f deg" % (offset[0], offset[1])) # The point source is offset to approximately the null point offset_direction = SkyCoord( ra=(ra + offset[0] / numpy.cos(numpy.pi * dec / 180.0)) * units.deg, dec=(dec + offset[1]) * units.deg, frame='icrs', equinox='J2000') if polarisation_frame.type == "stokesIQUV": original_components = [ Skycomponent( flux=[[1.0, 0.0, 0.0, 0.0]], direction=offset_direction, frequency=frequency, polarisation_frame=PolarisationFrame('stokesIQUV')) ] else: original_components = [ Skycomponent(flux=[[1.0]], direction=offset_direction, frequency=frequency, polarisation_frame=PolarisationFrame('stokesI')) ] else: offset = [0.0, 0.0] # Make a skymodel from S3 max_flux = 0.0 total_flux = 0.0 log.info("create_simulation_components: Constructing s3sky components") from rascil.processing_components.simulation import create_test_skycomponents_from_s3 all_components = create_test_skycomponents_from_s3( flux_limit=flux_limit / 100.0, phasecentre=phasecentre, polarisation_frame=polarisation_frame, frequency=numpy.array(frequency), radius=pbradius, fov=fov) original_components = filter_skycomponents_by_flux(all_components, flux_max=flux_max) log.info( "create_simulation_components: %d components before application of primary beam" % (len(original_components))) if filter_by_primary_beam: pbmodel = create_image( npixel=pb_npixel, cellsize=pb_cellsize, phasecentre=phasecentre, frequency=frequency, polarisation_frame=PolarisationFrame("stokesI")) stokesi_components = [ copy_skycomponent(o) for o in original_components ] for s in stokesi_components: s.flux = numpy.array([[s.flux[0, 0]]]) s.polarisation_frame = PolarisationFrame("stokesI") pb = create_pb(pbmodel, "MID_GAUSS", pointingcentre=phasecentre, use_local=False) pb_applied_components = [ copy_skycomponent(c) for c in stokesi_components ] pb_applied_components = apply_beam_to_skycomponent( pb_applied_components, pb) filtered_components = [] for icomp, comp in enumerate(pb_applied_components): if comp.flux[0, 0] > flux_limit: total_flux += comp.flux[0, 0] if abs(comp.flux[0, 0]) > max_flux: max_flux = abs(comp.flux[0, 0]) filtered_components.append(original_components[icomp]) log.info( "create_simulation_components: %d components > %.3f Jy after filtering with primary beam" % (len(filtered_components), flux_limit)) log.info( "create_simulation_components: Strongest components is %g (Jy)" % max_flux) log.info( "create_simulation_components: Total flux in components is %g (Jy)" % total_flux) original_components = [ copy_skycomponent(c) for c in filtered_components ] if show: plt.clf() show_image(pb, components=original_components) plt.show(block=False) log.info("create_simulation_components: Created %d components" % len(original_components)) # Primary beam points to the phasecentre offset_direction = SkyCoord(ra=ra * units.deg, dec=dec * units.deg, frame='icrs', equinox='J2000') return original_components, offset_direction
def create_low_test_skymodel_from_gleam(npixel=512, polarisation_frame=PolarisationFrame( "stokesI"), cellsize=0.000015, frequency=numpy.array([1e8]), channel_bandwidth=numpy.array([1e6]), phasecentre=None, kind='cubic', applybeam=True, flux_limit=0.1, flux_max=numpy.inf, flux_threshold=1.0, insert_method='Nearest', telescope='LOW') -> SkyModel: """Create LOW test skymodel from the GLEAM survey Stokes I is estimated from a cubic spline fit to the measured fluxes. The polarised flux is always zero. See http://www.mwatelescope.org/science/gleam-survey The catalog is available from Vizier. VIII/100 GaLactic and Extragalactic All-sky MWA survey (Hurley-Walker+, 2016) GaLactic and Extragalactic All-sky Murchison Wide Field Array (GLEAM) survey. I: A low-frequency extragalactic catalogue. Hurley-Walker N., et al., Mon. Not. R. Astron. Soc., 464, 1146-1167 (2017), 2017MNRAS.464.1146H :param telescope: :param npixel: Number of pixels :param polarisation_frame: Polarisation frame (default PolarisationFrame("stokesI")) :param cellsize: cellsize in radians :param frequency: :param channel_bandwidth: Channel width (Hz) :param phasecentre: phasecentre (SkyCoord) :param kind: Kind of interpolation (see scipy.interpolate.interp1d) Default: cubic :param applybeam: Apply the primary beam? :param flux_limit: Weakest component :param flux_max: Maximum strength component to be included in components :param flux_threshold: Split between components (brighter) and image (weaker) :param insert_method: Nearest | PSWF | Lanczos :return: :return: SkyModel """ check_data_directory() if phasecentre is None: phasecentre = SkyCoord(ra=+15.0 * u.deg, dec=-35.0 * u.deg, frame='icrs', equinox='J2000') radius = npixel * cellsize sc = create_low_test_skycomponents_from_gleam( flux_limit=flux_limit, polarisation_frame=polarisation_frame, frequency=frequency, phasecentre=phasecentre, kind=kind, radius=radius) sc = filter_skycomponents_by_flux(sc, flux_max=flux_max) if polarisation_frame is None: polarisation_frame = PolarisationFrame("stokesI") npol = polarisation_frame.npol nchan = len(frequency) shape = [nchan, npol, npixel, npixel] w = WCS(naxis=4) # The negation in the longitude is needed by definition of RA, DEC w.wcs.cdelt = [ -cellsize * 180.0 / numpy.pi, cellsize * 180.0 / numpy.pi, 1.0, channel_bandwidth[0] ] w.wcs.crpix = [npixel // 2 + 1, npixel // 2 + 1, 1.0, 1.0] w.wcs.ctype = ["RA---SIN", "DEC--SIN", 'STOKES', 'FREQ'] w.wcs.crval = [phasecentre.ra.deg, phasecentre.dec.deg, 1.0, frequency[0]] w.naxis = 4 w.wcs.radesys = 'ICRS' w.wcs.equinox = 2000.0 model = create_image_from_array(numpy.zeros(shape), w, polarisation_frame=polarisation_frame) if applybeam: beam = create_pb(model, telescope=telescope, use_local=False) sc = apply_beam_to_skycomponent(sc, beam) weaksc = filter_skycomponents_by_flux(sc, flux_max=flux_threshold) brightsc = filter_skycomponents_by_flux(sc, flux_min=flux_threshold) model = insert_skycomponent(model, weaksc, insert_method=insert_method) log.info( 'create_low_test_skymodel_from_gleam: %d bright sources above flux threshold %.3f, %d weak sources below ' % (len(brightsc), flux_threshold, len(weaksc))) return SkyModel(components=brightsc, image=model, mask=None, gaintable=None)
def create_low_test_image_from_gleam(npixel=512, polarisation_frame=PolarisationFrame( "stokesI"), cellsize=0.000015, frequency=numpy.array([1e8]), channel_bandwidth=numpy.array([1e6]), phasecentre=None, kind='cubic', applybeam=False, flux_limit=0.1, flux_max=numpy.inf, flux_min=-numpy.inf, radius=None, insert_method='Nearest') -> Image: """Create LOW test image from the GLEAM survey Stokes I is estimated from a cubic spline fit to the measured fluxes. The polarised flux is always zero. See http://www.mwatelescope.org/science/gleam-survey The catalog is available from Vizier. VIII/100 GaLactic and Extragalactic All-sky MWA survey (Hurley-Walker+, 2016) GaLactic and Extragalactic All-sky Murchison Wide Field Array (GLEAM) survey. I: A low-frequency extragalactic catalogue. Hurley-Walker N., et al., Mon. Not. R. Astron. Soc., 464, 1146-1167 (2017), 2017MNRAS.464.1146H :param npixel: Number of pixels :param polarisation_frame: Polarisation frame (default PolarisationFrame("stokesI")) :param cellsize: cellsize in radians :param frequency: :param channel_bandwidth: Channel width (Hz) :param phasecentre: phasecentre (SkyCoord) :param kind: Kind of interpolation (see scipy.interpolate.interp1d) Default: linear :return: Image """ check_data_directory() if phasecentre is None: phasecentre = SkyCoord(ra=+15.0 * u.deg, dec=-35.0 * u.deg, frame='icrs', equinox='J2000') if radius is None: radius = npixel * cellsize / numpy.sqrt(2.0) sc = create_low_test_skycomponents_from_gleam( flux_limit=flux_limit, polarisation_frame=polarisation_frame, frequency=frequency, phasecentre=phasecentre, kind=kind, radius=radius) sc = filter_skycomponents_by_flux(sc, flux_min=flux_min, flux_max=flux_max) if polarisation_frame is None: polarisation_frame = PolarisationFrame("stokesI") npol = polarisation_frame.npol nchan = len(frequency) shape = [nchan, npol, npixel, npixel] w = WCS(naxis=4) # The negation in the longitude is needed by definition of RA, DEC w.wcs.cdelt = [ -cellsize * 180.0 / numpy.pi, cellsize * 180.0 / numpy.pi, 1.0, channel_bandwidth[0] ] w.wcs.crpix = [npixel // 2 + 1, npixel // 2 + 1, 1.0, 1.0] w.wcs.ctype = ["RA---SIN", "DEC--SIN", 'STOKES', 'FREQ'] w.wcs.crval = [phasecentre.ra.deg, phasecentre.dec.deg, 1.0, frequency[0]] w.naxis = 4 w.wcs.radesys = 'ICRS' w.wcs.equinox = 2000.0 model = create_image_from_array(numpy.zeros(shape), w, polarisation_frame=polarisation_frame) model = insert_skycomponent(model, sc, insert_method=insert_method) if applybeam: beam = create_pb(model, telescope='LOW', use_local=False) model.data[...] *= beam.data[...] return model