def output_frames_fluori2d_sample():
# output fluorimetry 2D-image
lset = LatticeSettings()
lset.set_camera(zoom=0.0,
base_position=(-2.0, 0.4292, 0.4292),
focal_point=(0, 0.4292, 0.4292))
lset.set_particle(sphere_resolution=16)
lset.set_movie(frame_interval=0.033,
exposure_time=0.033,
frame_end_time=3.00)
lset.set_fluori2d(cutoff_depth=5.0e-8,
cutoff_psf=1.0e-7,
pixel_len=66.7e-9,
gauss_param=(1.0, 5.0e-8, 5.0e-8))
lvis = LatticeVisualizer(['./data/lattice/test_model.h5'],
image_file_dir='images',
movie_filename='./movies/test_lattice1.avi',
settings=lset)
# create data only(and show preview interactive mode)
#lvis.output_frames_fluori2d(output_image=False, data_filename='./movies/fluori2d_ls_sample.dat')
# create data and output fluori2d image
#lvis.output_frames_fluori2d(num_div=16)
# create data and output fluori2d movie
lvis.output_movie_fluori2d(num_div=16)
def output_sample():
# output movie by constant interval frame data.
lset = LatticeSettings()
lset.set_camera(image_size=(860, 640),
zoom=1.5,
focal_point=(0.5, 0.5, 0.5),
base_position=(-2.0, 0.5, 0.5))
lset.set_particle(sphere_resolution=16)
lset.set_movie(frame_interval=30,
movie_fps=4,
exposure_time=1.0,
frame_end_time=1000)
#lset.set_species_legend(width=0.2)
#lset.set_time_legend(width=0.1)
lvis = LatticeVisualizer(['./data/lattice/visualLogEGF_2.h5'],
image_file_dir='images',
movie_filename='./movies/test.avi',
settings=lset)
# view mode 0 : snapshot
# view mode 1 : stay time
# frames
# lvis.output_frames(0)
# lvis.output_frames(1)
# movie
# lvis.output_movie(0)
lvis.output_movie(1)
def output_frames_fluori2d_sample():
# output fluorimetry 2D-image
lset=LatticeSettings()
lset.set_camera(zoom=0.0,base_position=(-2.0, 0.4292, 0.4292), focal_point=(0, 0.4292, 0.4292))
lset.set_particle(sphere_resolution=16)
lset.set_movie(frame_interval=0.033, exposure_time=0.033, frame_end_time=3.00)
lset.set_fluori2d(cutoff_depth=5.0e-8, cutoff_psf=1.0e-7, pixel_len=66.7e-9, gauss_param=(1.0, 5.0e-8, 5.0e-8))
lvis=LatticeVisualizer(['./data/lattice/test_model.h5'],
image_file_dir='images',
movie_filename='./movies/test_lattice1.avi',
settings=lset)
# create data only(and show preview interactive mode)
#lvis.output_frames_fluori2d(output_image=False, data_filename='./movies/fluori2d_ls_sample.dat')
# create data and output fluori2d image
#lvis.output_frames_fluori2d(num_div=16)
# create data and output fluori2d movie
lvis.output_movie_fluori2d(num_div=16)
def output_sample():
# output movie by constant interval frame data.
lset = LatticeSettings()
lset.set_camera(image_size=(860, 640), zoom=1.5, focal_point=(0.5, 0.5, 0.5), base_position=(-2.0, 0.5, 0.5))
lset.set_particle(sphere_resolution=16)
lset.set_movie(frame_interval=30, movie_fps=4, exposure_time=1.0, frame_end_time = 1000)
#lset.set_species_legend(width=0.2)
#lset.set_time_legend(width=0.1)
lvis=LatticeVisualizer(['./data/lattice/visualLogEGF_2.h5'], image_file_dir='images',
movie_filename='./movies/test.avi', settings=lset)
# view mode 0 : snapshot
# view mode 1 : stay time
# frames
# lvis.output_frames(0)
# lvis.output_frames(1)
# movie
# lvis.output_movie(0)
lvis.output_movie(1)
