class Controller:
def __init__(self):
self.__repo = Repository()
def add_dna(self, dna_string):
if DNAValidator.validate_dna_string(dna_string):
self.__repo.append(dna_string)
return True
return False
def filter_dna_by_subseq(self, dna_substring):
# filter the original list
filtered_list = []
for lst in self.__repo.get_data():
if dna_substring in lst:
filtered_list.append(lst)
# return the sorted list by string length, reversed
filtered_list.sort(key=lambda lst: len(lst), reverse=True)
return filtered_list
def filter_punct3(self):
filtered_list = []
longest_seq_dict = {}
for lst in self.__repo.get_data():
cnt = 1
cnt_max = 1
for i in range(len(lst) - 1):
if lst[i] == lst[i + 1]:
cnt += 1
if cnt > cnt_max:
cnt_max = cnt
#print("FOR " + str(lst) + " GOT CNT MAX " + str(cnt_max))
longest_seq_dict.update({cnt_max: lst})
keys = longest_seq_dict.keys()
keys = sorted(keys, reverse=True)
for key in keys:
filtered_list.append(longest_seq_dict[key])
return filtered_list
def clear_repo(self):
self.__repo.clear()
class TestDNA(unittest.TestCase):
def run(self):
self.__ctrl = Controller()
self.assertFalse(self.__ctrl.add_dna('GATAX'))
self.assertFalse(self.__ctrl.add_dna(''))
# 101 de caractere - invalid
self.assertFalse(
self.__ctrl.add_dna(
'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'
))
# 100 caractere - valid
self.assertTrue(
self.__ctrl.add_dna(
'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'
))
self.assertTrue(self.__ctrl.add_dna('GATCAGGCTAGCTAGTCA'))
self.assertTrue(self.__ctrl.add_dna('GGGGGGGGGGGGGGGGAT'))
self.__ctrl.clear_repo()
self.__ctrl.add_dna('GATA')
self.__ctrl.add_dna('GTAAA')
self.__ctrl.add_dna('GTTTTTTT')
self.assertEqual(self.__ctrl.filter_dna_by_subseq('GA'), ['GATA'])
self.assertEqual(self.__ctrl.filter_punct3(),
['GTTTTTTT', 'GTAAA', 'GATA'])
self.__repo = Repository()
self.assertEqual(self.__repo.get_data(), [])
self.__repo.append('GATA')
self.assertEqual(self.__repo.length(), 1)
self.assertEqual(self.__repo.get_data(), ['GATA'])
self.__repo.clear()
self.assertEqual(self.__repo.get_data(), [])
def __init__(self, repository: Repository, preprocessor: Preprocessor):
self.repository = repository
self.preprocessor = preprocessor
self.data_source = preprocessor.run(repository.get_data())