"gene": "name",
"id": "identity",
"alignment": "alignment_length",
"gene_lenght": "ref_gene_lenght",
"cov": "coverage"
}
translator = Translate("gene", test_trans_table)
test_gene2 = {
"primary": "some_gene_key2",
"gene": "gen_name2",
"id": "97",
"alignment": "800",
"gene_lenght": "800",
"cov": "99"
}
result.add_class(cl="genes",
result_type="gene",
**translator.translate(test_gene2))
try:
result.check_results()
soft_result.check_results()
except CGECoreOutInputError as e:
print("Error dict:\n{}".format(e.errors))
print(json.dumps(result))
print(json.dumps(soft_result))
