def process_databases(self, fasta_file, contam_location):
"""Gets selection value from radiobuttons and then passes those values to imported fasta_reverse function.
More documentation on how fasta_reverse works can be found in the reverse_fasta.py file.
"""
reverse_values = list(self.reverse_contams.get_state())
# Initially set everything to false
forward = False
reverse = False
both = False
decoy_contams = reverse_values[0]
target_contams = reverse_values[1]
if decoy_contams:
both = True
if target_contams:
forward = True
## # no longer have an option that gets a target/decoy DB without contaminants
## if not contams:
## contam_location = os.path.join(contam_location, "block") # Prevent script from finding contams file
if decoy_contams or target_contams:
reverse_fasta.main(fasta_file,
forward,
reverse,
both,
contam_path=contam_location)
def database_processing(self, fasta_file, contam_location):
"""Gets selection value from radiobuttons and then passes those values to imported reverse_fasta main function.
More documentation on how reverse_fasta works can be found in the reverse_fasta.py file.
"""
reverse_values = list(self.reverse_contams.get_state())
# Initially set everything to false
forward = False
reverse = False
both = False
decoy_contams = reverse_values[0]
target_contams = reverse_values[1]
if decoy_contams:
both = True
if target_contams:
forward = True
if decoy_contams or target_contams:
reverse_fasta.main(fasta_file, forward, reverse, both, contam_path=contam_location)