def linkTest(self, anntype, annvalue, anntypeuri, annexpect):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
args = [
"ro", "link", rodir+"/"+"subdir1/subdir1-file.txt", anntype, annvalue,
"-v",
]
with SwitchStdout(self.outstr):
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
self.assertEqual(outtxt.count("ro link"), 1)
# Read manifest and check for annotation
annotations = ro_annotation._getFileAnnotations(rodir, "subdir1/subdir1-file.txt")
resourceuri = ro_manifest.getComponentUri(rodir, "subdir1/subdir1-file.txt")
expected_annotations = (
[ (resourceuri, anntypeuri, annexpect)
])
count = 0
for next in list(annotations):
log.debug("- next %s"%(str(next[0])) )
log.debug(" - (%s, %s)"%(str(next[1]),str(next[2])) )
if next in expected_annotations:
count += 1
else:
self.assertTrue(False, "Not expected (%d) %s"%(count, repr(next)))
self.assertEqual(count,1)
self.deleteTestRo(rodir)
return
def annotateTest(self, anntype, annvalue, anntypeuri, annexpect):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
args = [
"ro", "annotate", rodir+"/"+"subdir1/subdir1-file.txt", anntype, annvalue,
"-v",
]
with SwitchStdout(self.outstr):
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
self.assertEqual(outtxt.count("ro annotate"), 1)
# Read manifest and check for annotation
annotations = ro_annotation._getFileAnnotations(rodir, "subdir1/subdir1-file.txt")
resourceuri = ro_manifest.getComponentUri(rodir, "subdir1/subdir1-file.txt")
expected_annotations = (
[ (resourceuri, anntypeuri, rdflib.Literal(annexpect))
])
for i in range(1):
next = annotations.next()
#log.debug("Next %s"%(repr(next)))
if ( next not in expected_annotations):
self.assertTrue(False, "Not expected (%d) %s"%(i, repr(next)))
self.assertRaises(StopIteration, annotations.next)
self.deleteTestRo(rodir)
return
def testAnnotateMultiple(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
rofile = rodir+"/"+"subdir1/subdir1-file.txt"
define_annotations = (
[ {"atypename": "type", "avalue":"atype", "atypeuri":DCTERMS.type, "aexpect":"atype" }
, {"atypename": "keywords", "avalue":"asubj", "atypeuri":DCTERMS.subject, "aexpect":"asubj" }
, {"atypename": "description", "avalue":"adesc", "atypeuri":DCTERMS.description, "aexpect":"adesc" }
, {"atypename": "format", "avalue":"aformat", "atypeuri":DCTERMS.format, "aexpect":"aformat" }
, {"atypename": "title", "avalue":"atitle", "atypeuri":DCTERMS.title, "aexpect":"atitle" }
, {"atypename": "created", "avalue":"acreated", "atypeuri":DCTERMS.created, "aexpect":"acreated" }
#, {"atypename": ..., "avalue":..., "atypeuri":..., "aexpect":... }
#, {"atypename": ..., "avalue":..., "atypeuri":..., "aexpect":... }
])
self.annotateMultiple(rodir, rofile, define_annotations)
# Read manifest and check for annotation
annotations = ro_annotation._getFileAnnotations(rodir, "subdir1/subdir1-file.txt")
resourceuri = ro_manifest.getComponentUri(rodir, "subdir1/subdir1-file.txt")
expected_annotations = (
[ (resourceuri, a["atypeuri"], rdflib.Literal(a["aexpect"]))
for a in define_annotations
])
for i in range(6):
next = annotations.next()
#log.debug("Next %s"%(repr(next)))
if ( next not in expected_annotations):
self.assertTrue(False, "Not expected (%d) %s"%(i, repr(next)))
self.assertRaises(StopIteration, annotations.next)
# Clean up
self.deleteTestRo(rodir)
return
def testLinkWithGraph(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
rofile = rodir+"/"+"subdir1/subdir1-file.txt"
define_annotations = (
[ {"atypename": "type", "avalue":"atype", "atypeuri":DCTERMS.type, "aexpect":"atype" }
, {"atypename": "keywords", "avalue":"asubj", "atypeuri":DCTERMS.subject, "aexpect":"asubj" }
, {"atypename": "description", "avalue":"adesc", "atypeuri":DCTERMS.description, "aexpect":"adesc" }
, {"atypename": "format", "avalue":"aformat", "atypeuri":DCTERMS.format, "aexpect":"aformat" }
, {"atypename": "title", "avalue":"atitle", "atypeuri":DCTERMS.title, "aexpect":"atitle" }
, {"atypename": "created", "avalue":"acreated", "atypeuri":DCTERMS.created, "aexpect":"acreated" }
])
# Create annotation graph file and apply annotations
annotation_graph = rdflib.Graph()
resourceuri = ro_manifest.getComponentUri(rodir, "subdir1/subdir1-file.txt")
for ann in define_annotations:
annotation_graph.add( (resourceuri, ann["atypeuri"], rdflib.Literal(ann["aexpect"])) )
annotation_graph_filename = os.path.join(os.path.abspath(rodir), "annotate-subdir1-file.txt.rdf")
annotation_graph.serialize(annotation_graph_filename,
format='xml', base=ro_manifest.getRoUri(rodir), xml_base="")
args = ["ro", "annotate", rofile, "-g", annotation_graph_filename ]
with SwitchStdout(self.outstr):
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
# Read manifest and check for annotation
annotations = ro_annotation._getFileAnnotations(rodir, "subdir1/subdir1-file.txt")
expected_annotations = (
[ (resourceuri, a["atypeuri"], rdflib.Literal(a["aexpect"]))
for a in define_annotations
])
count = 0
for next in list(annotations):
log.debug("- next %s"%(str(next[0])) )
log.debug(" - (%s, %s)"%(str(next[1]),str(next[2])) )
if next in expected_annotations:
count += 1
else:
self.assertTrue(False, "Not expected (%d) %s"%(count, repr(next)))
self.assertEqual(count,6)
# Clean up
self.deleteTestRo(rodir)
return
def testAnnotateFileWithEscapes(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
rofile1 = rodir+"/"+"filename with spaces.txt"
rofile2 = rodir+"/"+"filename#with#hashes.txt"
with SwitchStdout(self.outstr):
for rofile in [rofile1,rofile2]:
args = ["ro", "annotate", rofile, "type", "atype"]
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
# Reset output stream buffer closed
self.outstr = StringIO.StringIO()
# Read manifest and check for annotation
for rofile in [rofile1,rofile2]:
resourceuri = ro_manifest.getComponentUri(rodir, rofile)
annotations = ro_annotation._getFileAnnotations(rodir, rofile)
next = annotations.next()
self.assertEqual(next, (resourceuri, DCTERMS.type, rdflib.Literal("atype")))
self.assertRaises(StopIteration, annotations.next)
# Clean up
self.deleteTestRo(rodir)
return
def testRemoveGetFileAnnotations(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "Test remove file annotation", "ro-testRoAnnotate")
roresource = "subdir1/subdir1-file.txt"
# Add anotations for file
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"type", "Test file")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"description", "File in test research object")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"note", "Research object file created for annotation testing")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"title", "Test file in RO")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"created", "2011-12-07")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"rdf:type", ROTERMS.resource)
# Remove annotations
ro_annotation._removeSimpleAnnotation(ro_config, rodir, roresource,
"description", "File in test research object")
ro_annotation._removeSimpleAnnotation(ro_config, rodir, roresource,
"note", None)
# Retrieve the file anotations
annotations = ro_annotation._getFileAnnotations(rodir, roresource)
resourceuri = ro_manifest.getComponentUri(rodir, roresource)
log.debug("resourceuri: %s"%(resourceuri))
expected_annotations = (
[ (resourceuri, DCTERMS.type, rdflib.Literal('Test file'))
, (resourceuri, DCTERMS.title, rdflib.Literal('Test file in RO'))
, (resourceuri, DCTERMS.created, rdflib.Literal('2011-12-07'))
, (resourceuri, RDF.type, ROTERMS.resource)
])
for i in range(4):
next = annotations.next()
#log.debug("Next %s"%(repr(next)))
if ( next not in expected_annotations):
self.assertTrue(False, "Not expected (%d) %s"%(i, repr(next)))
self.assertRaises(StopIteration, annotations.next)
self.deleteTestRo(rodir)
return