def treetojson(self,tree,schema):
jsoncal={}
for position in range(tree.childCount()):
child=tree.child(position)
label= unicode(child.text(0))
try:
if label in schema["properties"]:
if schema["properties"][label]['type']=="string":
jsoncal[label]=unicode(child.text(1))
if schema["properties"][label]['type']=="number":
jsoncal[label]=float(unicode(child.text(1)))
if schema["properties"][label]['type']=="integer":
jsoncal[label]=int(unicode(child.text(1)))
if schema["properties"][label]['type']=="array":
jsoncal[label]=json.loads(unicode(child.text(1)))
if schema["properties"][label]['type']=="object":
if 'required' not in schema["properties"][label] or schema["properties"][label]['required']==False:
if child.checkState(1):
if child.childCount()==0:
jsoncal[label]=schematodefault(schema["properties"][label])
else:
jsoncal[label]=self.treetojson(child,schema["properties"][label])
else:
pass
else:
jsoncal[label]=self.treetojson(child,schema["properties"][label])
except ValueError:
pass
return jsoncal
def convert():
"""
This implements the functionality oft :ref:`converter`.
It parses the commandline options and converts the
Fit2d info file to the JSON data used by the SAXS.callibration class.
"""
parser = OptionParser()
usage = ("\n" + "To extract data from Fit2d output:\n" +
" %prog [options] calibration.txt ouput.saxsconf\n" +
"Or to convert fom older saxsconf:\n" +
" %prog [options] cal.saxsconf ouput.saxsconf\n")
parser = OptionParser(usage)
parser.add_option(
"-t",
"--template",
dest="templatepath",
help="Path to calibration file which serves as template.",
metavar="FILE",
default="")
(options, args) = parser.parse_args(args=None, values=None)
schemapath = os.path.dirname(__file__) + '/schema.json'
schema = (json.load(open(schemapath)))
if len(args) != 2:
parser.error("incorrect number of arguments")
if os.path.isfile(args[1]):
if options.templatepath != "":
calfile = open(options.templatepath)
else:
calfile = open(args[1])
caldict = json.load(calfile)
print schemapath + ",", __file__
try:
validate(caldict, schema)
except ValidationError as e:
print "Validation Error:" + e.message
return
s = caldict
print "parsed atributes are added replaced in the target file"
else:
s = schematools.schematodefault(schema)
with open(args[0]) as infile:
fromjson = None
try:
fromjson = json.load(infile)
except Exception as e:
print e
if fromjson:
jsontojson(json.dumps(fromjson), s)
else:
txt2json(open(args[0]).read(), s)
with open(args[1], "w") as outfile:
json.dump(s, outfile, indent=4, separators=(',', ': '))
print json.dumps(s, indent=4, separators=(',', ': '))
def newfile(self):
dialog=QtGui.QFileDialog()
filename= unicode(dialog.getSaveFileName( caption= "Create New File AS" ))
default= schematools.schematodefault(self.app.calibeditor.model.calschema)
json.dump(
default, open(filename,"w")
)
self.app.calibeditor.model.loadfile(filename)
self.app.calibeditor.reset()
self.appendrecentfile(filename)
def newfromscratch(self):
"""
New action from File menue
"""
self.data.cal=schematodefault(self.data.calschema)
self.ui.treeWidgetCal.clear()
self.buildcaltree(self.data.cal, self.data.calschema,self.ui.treeWidgetCal)
self.loadmask()
self.filename="New.saxsconf"
self.mainWindow.setWindowTitle("SAXS Leash | "+os.path.basename(self.filename)+"*")
def convert():
"""
This implements the functionality oft :ref:`converter`.
It parses the commandline options and converts the
Fit2d info file to the JSON data used by the SAXS.callibration class.
"""
parser = OptionParser()
usage = ("\n"
+"To extract data from Fit2d output:\n"
+ " %prog [options] calibration.txt ouput.saxsconf\n"
+"Or to convert fom older saxsconf:\n"
+" %prog [options] cal.saxsconf ouput.saxsconf\n")
parser = OptionParser(usage)
parser.add_option("-t", "--template", dest="templatepath",
help="Path to calibration file which serves as template.", metavar="FILE",default="")
(options, args) = parser.parse_args(args=None, values=None)
schemapath=os.path.dirname(__file__)+'/schema.json'
schema=(json.load(open(schemapath)))
if len(args)!=2:
parser.error("incorrect number of arguments")
if os.path.isfile(args[1]):
if options.templatepath!="":
calfile=open(options.templatepath)
else:
calfile=open(args[1])
caldict=json.load(calfile)
print schemapath+",",__file__
try:
validate(caldict,schema)
except ValidationError as e:
print "Validation Error:"+e.message
return
s=caldict
print "parsed atributes are added replaced in the target file"
else:
s=schematools.schematodefault(schema)
with open(args[0])as infile:
fromjson=None
try:
fromjson=json.load(infile)
except Exception as e:
print e
if fromjson:
jsontojson(json.dumps(fromjson),s)
else:
txt2json(open(args[0]).read(),s)
with open(args[1],"w") as outfile:
json.dump(s, outfile, indent=4, separators=(',', ': '))
print json.dumps(s, indent=4, separators=(',', ': '))
def importtext(self):
text=unicode(self.importdialog.textEditbuffer.toPlainText ())
if not self.data.cal:
self.data.cal=schematodefault(self.data.calschema)
try:
self.data.cal=txt2json(text,self.data.cal)
except ValueError as e:
self.errmsg.showMessage(e.message)
return
self.ui.treeWidgetCal.clear()
self.buildcaltree(self.data.cal,self.data.calschema,self.ui.treeWidgetCal)
self.importdialog.close()
def __init__(self,app):
super(consolidatepanel,self).__init__( )
self.app=app
self.hlayout=QtGui.QHBoxLayout()
self.setLayout(self.hlayout)
self.treeview=QtGui.QTreeView()
self.hlayout.addWidget(self.treeview)
self.model=jsonschematreemodel.jsonschematreemodel( app,
schema=json.load(open(os.path.dirname(__file__)
+os.sep+'DataConsolidationConf.json'),
object_pairs_hook=collections.OrderedDict)
)
self.treeview.setModel(self.model)
self.treeview.setMinimumWidth(400)
self.treeview.setMinimumHeight(400)
self.treeview.setAlternatingRowColors(True)
self.treeview.setItemDelegateForColumn(1,calibeditdelegate.calibEditDelegate( app ))
self.reset()
default= schematools.schematodefault( self.model.schema)
self.filename=os.path.expanduser("~"
+os.sep
+self.app.netconf["Name"]
+"consolconf.json"
)
if not os.path.isfile(self.filename):
import shutil
shutil.copy(os.path.dirname(__file__) +os.sep+'consolconftemplate.json',self.filename)
self.model.loadfile(self.filename)
self.reset()
self.connect(self.model, QtCore.SIGNAL('dataChanged(QModelIndex,QModelIndex)'),self.model.save)
self.submitbutton=QtGui.QPushButton("Collect All Data")
self.submitlayout=QtGui.QVBoxLayout()
self.hlayout.addLayout(self.submitlayout)
self.submitlayout.addWidget( self.submitbutton)
self.submitlayout.addStretch()
self.connect(self.submitbutton, QtCore.SIGNAL("clicked()"),self.startmerge)
self.connect(self.app.plotthread,QtCore.SIGNAL("mergeresultdata(QString)"),self.showmergeresults)
def InitFromDefault(self):
self.calib = schematodefault(self.schema)
def handleitemchanged(self, index, index2):
"""
generate json from QStandardItem data structure
"""
if index.isValid():
parent = self.itemFromIndex(index.sibling(index.row(), 0))
item = self.itemFromIndex(index)
type = item.data(role=TYPE).toString()
text = item.data(role=QtCore.Qt.DisplayRole).toString()
action = unicode(item.data(role=ACTION).toString())
if not action:
if (item.isCheckable() and type == "object"
and not item.hasChildren() and item.checkState() == 2):
subschema = json.loads(
unicode(item.data(role=SUBSCHEMA).toString()))
default = schematodefault(subschema)
self.dontsave = True
self.bulidfromjson(default,
subschema,
self.itemFromIndex(
index.sibling(index.row(), 0)),
row=0)
self.dontsave = False
elif (item.isCheckable() and type == "array"
and not item.hasChildren() and item.checkState() == 2):
value = self.itemFromIndex(index)
value.setData("editablearray", role=ISEDITABLEARRAY)
value.setData("add/remove item",
role=QtCore.Qt.DisplayRole)
elif (item.isCheckable() and parent.hasChildren()
and item.checkState() == 0):
if self.allowtodelete(parent):
for row in range(parent.rowCount() + 1):
parent.takeRow(0)
else:
self.blockSignals(True)
item.setCheckState(2)
self.blockSignals(False)
else:
if action == "Add New Item":
subschema = json.loads(
unicode(item.data(role=SUBSCHEMA).toString()))['items']
self.setData(index, "", role=ACTION)
default = schematodefault(subschema)
arrayroot = self.itemFromIndex(
index.sibling(index.row(), 0))
nearrayitem = QtGui.QStandardItem(str(
arrayroot.rowCount()))
value = QtGui.QStandardItem()
if subschema['type'] != "object":
value.setData(subschema['type'], role=TYPE)
value.setData(json.dumps(subschema), role=SUBSCHEMA)
value.setData(subschema["default"],
role=QtCore.Qt.DisplayRole)
if subschema['type'] != "string":
value.setData(QtCore.Qt.AlignRight,
role=QtCore.Qt.TextAlignmentRole)
else:
value.setData("arrayitem", role=TYPE)
self.bulidfromjson(default,
subschema,
nearrayitem,
row=0)
arrayroot.appendRow([nearrayitem, value])
elif action.startswith("Delete Item"):
m = re.match("Delete Item (\d+)", action)
itemnumber = int(m.group(1))
arrayroot = self.itemFromIndex(
index.sibling(index.row(), 0))
arrayroot.removeRow(itemnumber)
for row in range(arrayroot.rowCount()):
arrayroot.child(row,
0).setData(str(row),
role=QtCore.Qt.DisplayRole)
def InitFromDefault(self):
self.calib=schematodefault(self.calschema)
def handleitemchanged(self,index,index2):
"""
generate json from QStandardItem data structure
"""
if index.isValid() :
parent=self.itemFromIndex(index.sibling(index.row(),0))
item=self.itemFromIndex(index)
type=item.data(role=TYPE).toString()
text=item.data(role=QtCore.Qt.DisplayRole).toString()
action=unicode(item.data(role=ACTION).toString())
if not action:
if (item.isCheckable()
and type=="object"
and not item.hasChildren()
and item.checkState()==2 ):
subschema=json.loads(unicode(item.data(role=SUBSCHEMA).toString()))
default=schematodefault(subschema)
self.dontsave=True
self.bulidfromjson(default,
subschema ,
self.itemFromIndex(index.sibling(index.row(),0)),row=0 )
self.dontsave=False
elif (item.isCheckable()
and type=="array"
and not item.hasChildren()
and item.checkState()==2):
value=self.itemFromIndex(index)
value.setData("editablearray",role=ISEDITABLEARRAY)
value.setData("add/remove item",role=QtCore.Qt.DisplayRole)
elif (item.isCheckable()
and parent.hasChildren()
and item.checkState()==0):
if self.allowtodelete(parent):
for row in range( parent.rowCount()+1):
parent.takeRow(0)
else:
self.blockSignals(True)
item.setCheckState(2)
self.blockSignals(False)
else:
if action=="Add New Item":
subschema=json.loads(unicode(item.data(role=SUBSCHEMA).toString()))['items']
self.setData(index,"",role=ACTION)
default=schematodefault(subschema)
print json.dumps(default,indent=2)
arrayroot=self.itemFromIndex(index.sibling(index.row(),0))
print arrayroot.rowCount()
nearrayitem=QtGui.QStandardItem(str(arrayroot.rowCount()))
value=QtGui.QStandardItem()
if subschema['type']!="object":
value.setData(subschema['type'],role=TYPE)
value.setData(json.dumps(subschema),role=SUBSCHEMA)
value.setData(subschema["default"],role=QtCore.Qt.DisplayRole)
if subschema['type']!="string":
value.setData(QtCore.Qt.AlignRight,role=QtCore.Qt.TextAlignmentRole)
else:
value.setData("arrayitem",role=TYPE)
self.bulidfromjson(default,
subschema ,
nearrayitem,row=0 )
arrayroot.appendRow([nearrayitem,value])
elif action.startswith("Delete Item"):
m=re.match("Delete Item (\d+)",action)
itemnumber=int(m.group(1))
arrayroot=self.itemFromIndex(index.sibling(index.row(),0))
arrayroot.removeRow(itemnumber)
for row in range(arrayroot.rowCount()):
arrayroot.child(row,0).setData(str(row),role=QtCore.Qt.DisplayRole)
def __init__(self, app):
super(consolidatepanel, self).__init__()
self.app = app
self.localmergetstatusthread = mergestatusthread(self)
self.timeformat = "%Y.%m.%d - %H:%M:%S"
self.connect(self.localmergetstatusthread,
QtCore.SIGNAL("sig_writeToStatus(QString)"),
self.writeToStatus)
self.hlayout = QtGui.QHBoxLayout()
self.setLayout(self.hlayout)
self.vlayout = QtGui.QVBoxLayout()
self.hlayout.addLayout(self.vlayout)
self.treeview = QtGui.QTreeView()
self.vlayout.addWidget(self.treeview)
self.statuslabel = QtGui.QLabel()
self.vlayout.addWidget(self.statuslabel)
self.statuslabel.setText("Datamerger status:")
self.statusfield = QtGui.QTextEdit()
self.vlayout.addWidget(self.statusfield)
self.statusfield.setMaximumHeight(150)
self.statusfield.setMinimumHeight(150)
self.statusfield.setVerticalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOff)
self.statusfield.setVerticalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOn)
self.model = jsonschematreemodel.jsonschematreemodel(
app,
schema=json.load(open(
os.path.dirname(__file__) + os.sep +
'DataConsolidationConf.json'),
object_pairs_hook=collections.OrderedDict))
self.treeview.setModel(self.model)
self.treeview.setMinimumWidth(400)
self.treeview.setMinimumHeight(400)
self.treeview.setAlternatingRowColors(True)
self.treeview.setItemDelegateForColumn(
1, calibeditdelegate.calibEditDelegate(app))
self.reset()
default = schematools.schematodefault(self.model.schema)
self.filename = os.path.expanduser("~" + os.sep +
self.app.netconf["Name"] +
"consolconf.json")
if not os.path.isfile(self.filename):
import shutil
shutil.copy(
os.path.dirname(__file__) + os.sep + 'consolconftemplate.json',
self.filename)
try:
self.calib = json.load(open(self.filename),
object_pairs_hook=collections.OrderedDict)
validate(self.calib, self.model.schema)
except Exception as e:
print e
import shutil
shutil.copy(
os.path.dirname(__file__) + os.sep + 'consolconftemplate.json',
self.filename)
self.model.loadfile(self.filename)
self.reset()
self.connect(self.model,
QtCore.SIGNAL('dataChanged(QModelIndex,QModelIndex)'),
self.model.save)
self.submitbutton = QtGui.QPushButton("Collect All Data")
self.submitbutton.setEnabled(False)
self.submitbutton.setMinimumWidth(150)
self.submitbutton.setMaximumWidth(150)
self.submitlabel = QtGui.QLabel("Waiting for calibration...")
self.submitlayout = QtGui.QVBoxLayout()
self.hlayout.addLayout(self.submitlayout)
self.submitlayout.addWidget(self.submitlabel)
self.submitlayout.addWidget(self.submitbutton)
self.submitlayout.addStretch()
self.connect(self.submitbutton, QtCore.SIGNAL("clicked()"),
self.startmerge)
self.connect(self.app.plotthread,
QtCore.SIGNAL("mergeresultdata(QString)"),
self.showmergeresults)
self.writeToStatus(
"\nDatamerger waiting for input... Make sure you load a calibration first!"
)
def __init__(self,app):
super(consolidatepanel,self).__init__( )
self.app=app
self.localmergetstatusthread = mergestatusthread(self)
self.timeformat = "%Y.%m.%d - %H:%M:%S"
self.connect(self.localmergetstatusthread, QtCore.SIGNAL("sig_writeToStatus(QString)"),self.writeToStatus)
self.hlayout=QtGui.QHBoxLayout()
self.setLayout(self.hlayout)
self.vlayout=QtGui.QVBoxLayout()
self.hlayout.addLayout(self.vlayout)
self.treeview=QtGui.QTreeView()
self.vlayout.addWidget(self.treeview)
self.statuslabel =QtGui.QLabel()
self.vlayout.addWidget(self.statuslabel)
self.statuslabel.setText("Datamerger status:")
self.statusfield = QtGui.QTextEdit()
self.vlayout.addWidget(self.statusfield)
self.statusfield.setMaximumHeight(150)
self.statusfield.setMinimumHeight(150)
self.statusfield.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOff)
self.statusfield.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOn)
self.model=jsonschematreemodel.jsonschematreemodel( app,
schema=json.load(open(os.path.dirname(__file__)
+os.sep+'DataConsolidationConf.json'),
object_pairs_hook=collections.OrderedDict)
)
self.treeview.setModel(self.model)
self.treeview.setMinimumWidth(400)
self.treeview.setMinimumHeight(400)
self.treeview.setAlternatingRowColors(True)
self.treeview.setItemDelegateForColumn(1,calibeditdelegate.calibEditDelegate( app ))
self.reset()
default= schematools.schematodefault(self.model.schema)
self.filename=os.path.expanduser("~"
+os.sep
+self.app.netconf["Name"]
+"consolconf.json"
)
if not os.path.isfile(self.filename):
import shutil
shutil.copy(os.path.dirname(__file__) +os.sep+'consolconftemplate.json',self.filename)
try:
self.calib=json.load(open(self.filename),object_pairs_hook=collections.OrderedDict)
validate(self.calib,self.model.schema)
except Exception as e:
print e
import shutil
shutil.copy(os.path.dirname(__file__) +os.sep+'consolconftemplate.json',self.filename)
self.model.loadfile(self.filename)
self.reset()
self.connect(self.model, QtCore.SIGNAL('dataChanged(QModelIndex,QModelIndex)'),self.model.save)
self.submitbutton=QtGui.QPushButton("Collect All Data")
self.submitbutton.setEnabled(False)
self.submitbutton.setMinimumWidth(150)
self.submitbutton.setMaximumWidth(150)
self.submitlabel=QtGui.QLabel("Waiting for calibration...")
self.submitlayout=QtGui.QVBoxLayout()
self.hlayout.addLayout(self.submitlayout)
self.submitlayout.addWidget(self.submitlabel)
self.submitlayout.addWidget(self.submitbutton)
self.submitlayout.addStretch()
self.connect(self.submitbutton, QtCore.SIGNAL("clicked()"),self.startmerge)
self.connect(self.app.plotthread,QtCore.SIGNAL("mergeresultdata(QString)"),self.showmergeresults)
self.writeToStatus("\nDatamerger waiting for input... Make sure you load a calibration first!")