def _import_ytsurface(vertices, colors, alpha, emisses, colorindex,
meshname='Steve', meshlocation=(0,0,0), plot_index=0):
import numpy as np
deselect_all()
nftype = [("f1","int"),("f2","int"),("f3","int"),("f4","int")]
newfaces = np.empty(int(len(vertices)/3.), dtype=nftype) # store sets of face colors
cc = 0
for i in range(0,int(len(vertices)/3.)):
newfaces[i] = (cc, cc+1, cc+2, cc) # repeat last for triangles
cc = cc+3
me = bpy.data.meshes.new(meshname+"Mesh")
ob = bpy.data.objects.new(meshname,me)
ob.location = meshlocation # position object at 3d-cursor
bpy.context.scene.objects.link(ob) # Link object to scene
# Fill the mesh with verts, edges, faces
me.from_pydata(vertices.tolist(),[],newfaces.tolist())
me.update(calc_edges=True) # Update mesh with new data
# materials woop woop!
obj = bpy.data.objects[meshname]
bpy.context.scene.objects.active=obj
for i in range(0,len(colors[0])):
mat = makeMaterial(meshname+str(i)+'_'+str(plot_index),
(colors[0][i],colors[1][i],colors[2][i]),
(1,1,1), alpha, emisses[i])
setMaterial(obj,mat)
# now, do individual mat indecies
for i in range(0,len(newfaces)):
me.polygons[i].material_index = colorindex[i]
def color(self,color):
bpy.context.scene.objects.active = bpy.data.objects[self.__name]
delete_unused_materials(self.__name)
sphmat = makeMaterial(self.__name, color, (1,1,1), 1.0, 0.0) # no emissivity or transperency for now
setMaterial(bpy.data.objects[self.__name], sphmat)
self.__color = color
def import_ytsph(filename, halo_sizes, color_field, color_map, color_log, n_ref):
from yt import load
import numpy as np
import bmesh
from scienceutils import deselect_all
from scienceutils import makeMaterial, setMaterial
ds = load(filename)
# strip "/" for naming
xnn2 = 0
xnn = 0
# you only want the file name, not all the directory stuff
while xnn != -1:
xnn2 = xnn
xnn = filename.find('/',xnn+1)
fname_out = filename[xnn2+1:]
# get coords and color data
dd = ds.all_data()
#xcoord = dd['Gas','Coordinates'][:,0].v
#ycoord = dd['Gas','Coordinates'][:,1].v
#zcoord = dd['Gas','Coordinates'][:,2].v
xcoord = (dd['Gas','Coordinates'][:,0].in_units('unitary')).v
ycoord = (dd['Gas','Coordinates'][:,1].in_units('unitary')).v
zcoord = (dd['Gas','Coordinates'][:,2].in_units('unitary')).v
cs = dd[color_field]
print('cs')
print(len(cs))
# map colorcode to 256 material colors
if color_log: cs = np.log10(cs)
mi, ma = cs.min(), cs.max()
cs = (cs - mi) / (ma - mi)
from yt.visualization._colormap_data import color_map_luts # import colors
# the rgb colors
colors = color_map_luts[color_map]
x = np.mgrid[0.0:1.0:colors[0].shape[0]*1j]
# how the values map to the colors
color_index = (np.interp(cs,x,x)*(colors[0].shape[0]-1)).astype("uint8")
color_index_list = color_index.tolist()
name = []
hused = []
scale = [(1.0, 1.0, 1.0)]
# create scale if necessary
if len(scale[:][:]) < color_index.max(): # generate larger scale
sc = (scale[0][0], scale[0][1], scale[0][2])
scale = []
for i in range(color_index.min(), color_index.max()):
scale.append(sc)
# also, allow for multiple halo sizes
if len(halo_sizes) < color_index.max():
hs = halo_sizes[0]
halo_sizes = []
for i in range(color_index.min(), color_index.max()):
halo_sizes.append(hs)
# create sph data into meshes and color them
for ind in range(color_index.min(), color_index.max()):
cl = [i for i,j in enumerate(color_index_list) if j == ind]
print(ind)
if len(cl) > 0:
#print("particle name")
#print(name)
fname = fname_out + '_' + str(ind)
name.append('particle_'+fname)
hused.append(halo_sizes[ind])
me = bpy.data.meshes.new('particleMesh_'+fname)
ob = bpy.data.objects.new('particle_'+fname,me)
ob.location = (0,0,0)
bpy.context.scene.objects.link(ob) # Link object to scene
coords = [(0,0,0)]
me.from_pydata(coords,[],[])
ob.location = (0,0,0)
ob = bpy.data.objects['particle_'+fname] # select right object
deselect_all()
ob.select = True
bpy.context.scene.objects.active=ob
mat = makeMaterial('particle_'+fname,
(colors[0][ind],colors[1][ind],colors[2][ind]),
(1,1,1), 1.0, 1.0, mat_type = 'HALO', halo_size=halo_sizes[ind])
setMaterial(ob,mat)
# add in verts
bpy.ops.object.mode_set(mode='EDIT') # toggle to edit mode
bm = bmesh.from_edit_mesh(ob.data)
# now, find all verts with this color index (ind)
# move original vertex to actual location
if hasattr(bm.verts, "ensure_lookup_table"): # to make it work with 2.73
bm.verts.ensure_lookup_table()
bm.verts[0].co = (xcoord[cl[0]]*scale[ind][0],ycoord[cl[0]]*scale[ind][1],zcoord[cl[0]]*scale[ind][2])
print('coords')
print(xcoord[cl[0]], ycoord[cl[0]], zcoord[cl[0]])
print(len(cl))
print(len(xcoord))
for i in range(1,len(xcoord[cl])):
bm.verts.new((xcoord[cl[i]]*scale[ind][0],ycoord[cl[i]]*scale[ind][1],zcoord[cl[i]]*scale[ind][2]))
bmesh.update_edit_mesh(ob.data)
bpy.ops.object.mode_set(mode='OBJECT')
#print(ind)
#print(bpy.data.objects['particle_' + fname].name)
print(bpy.data.objects['particle_' + fname].location)
#print("NAME OUT HERE")
#print(name)
return name, ds, hused
def new_particle_set(self,
dfile,
particle_num=1,
colors=None,
halo_sizes=None,
scale=(1, 1, 1)):
# initial file, number of particles, colors array
import bmesh
deselect_all()
location = (0, 0, 0)
# strip "/" and ".txt"s for names
xnn2 = 0
xnn = 0
# you only want the file name, not all the directory stuff
while xnn != -1:
xnn2 = xnn
xnn = dfile.find('/', xnn + 1)
fname = dfile[xnn2 + 1:]
# take out .txt stufftoo
xnn = fname.find('.txt')
fname = fname[0:xnn]
pname = []
# create different particle types
for p in range(0, particle_num):
#print(p)
num = "%02d" % (p)
pname.append(fname + 'particle' + num)
me = bpy.data.meshes.new(fname + 'particleMesh' + num)
ob = bpy.data.objects.new(fname + 'particle' + num, me)
ob.location = (0, 0, 0)
bpy.context.scene.objects.link(ob) # Link object to scene
coords = [(0, 0, 0)]
me.from_pydata(coords, [], [])
ob.location = (0, 0, 0)
if colors is not None:
color = colors[:][p]
halo_size = halo_sizes[p]
else:
print('no color')
color = (1, 1, 1)
halo_size = 0.1
mat = makeMaterial(fname + 'particle' + num,
color, (1, 1, 1),
1.0,
1.0,
mat_type='HALO',
halo_size=halo_size)
setMaterial(ob, mat) # sets everything to material 0 by default
ob = bpy.data.objects[fname + 'particle' +
num] # select right object
ob.select = True
bpy.context.scene.objects.active = ob
# now, add in different data types
p2 = -1 # for toggling to object mode when using a different particle
f = open(dfile, 'r') # open file for reading
for i, line in enumerate(f):
pint = int(p)
#p = data["p"][i] # get type - o - particle
linep = line.strip() # get rid of end line
data = linep.split(",") # split into data based on ","'s
p = float(data[4])
if p != p2:
bpy.ops.object.mode_set(mode='OBJECT') # toggle to edit mode
num = "%02d" % (p)
deselect_all()
ob = bpy.data.objects[fname + 'particle' +
num] # select right object
ob.select = True
bpy.context.scene.objects.active = ob
bpy.ops.object.mode_set(mode='EDIT') # toggle to edit mode
bm = bmesh.from_edit_mesh(ob.data)
if p != p2: # if first instance - move origional
if hasattr(bm.verts,
"ensure_lookup_table"): # to make it work with 2.73
bm.verts.ensure_lookup_table()
bm.verts[0].co = (float(data[1]) * scale[pint][0],
float(data[2]) * scale[pint][1],
float(data[3]) * scale[pint][2])
p2 = p
else:
bm.verts.new((float(data[1]) * scale[pint][0],
float(data[2]) * scale[pint][1],
float(data[3]) * scale[pint][2]))
f.close() # close up the file
# update all meshes
for p in range(0, particle_num):
deselect_all()
bpy.ops.object.mode_set(mode='OBJECT') # toggle to edit mode
num = "%02d" % (p)
ob = bpy.data.objects[fname + 'particle' +
num] # select right object
ob.select = True
bpy.context.scene.objects.active = ob
bpy.ops.object.mode_set(mode='EDIT') # toggle to edit mode
bmesh.update_edit_mesh(ob.data)
bpy.ops.object.mode_set(mode='OBJECT') # toggle to edit mode
return pname
else:
delete_object(cube_name)
cube = bpy.data.objects[cube_name]
cube.location = (0,0,0)
if file_type == 'amr':
cube.location = (0.5, 0.5, 0.5)
mat_name = mat_name_base + str(i).zfill(3)
# make a material
mat = bpy.data.materials.new(mat_name)
mat.type = 'VOLUME'
mat.volume.density = 0.0 # lower?
mat.volume.density_scale = 1.0 # upper?
mat.volume.scattering = 1.4
mat.volume.emission = 0.0
mat.transparency_method = 'Z_TRANSPARENCY'
setMaterial(bpy.data.objects[cube_name], mat)
# Create texture
mtex = mat.texture_slots.add()
mat.active_texture_index = 0
tex_name = tex_name_base + str(i).zfill(3)
tex = bpy.data.textures.new(tex_name, type = 'POINT_DENSITY')
mat.active_texture = tex
tex.use_color_ramp = True
bpy.data.textures[tex_name].point_density.point_source = 'OBJECT'
bpy.data.textures[tex_name].point_density.object = bpy.data.objects[particle_name_base + str(i).zfill(3)]
bpy.data.textures[tex_name].point_density.radius = pc_radius
mat.texture_slots[0].texture_coords = 'ORCO' # generated coords
mat.texture_slots[0].mapping = 'CUBE' # map to a cube
# NO idea
ts = mat.texture_slots[0]
ts.use_map_density = True
def __init__(self,
ds,
image_name="ytProjectionImage",
axis='z',
variable=('gas', 'temperature'),
weight_variable=('gas', 'density'),
center=[0.0, 0.0, 0.0],
width=10.0,
units='kpc',
color_map='algae',
show_annotations=False):
from yt import ProjectionPlot, OffAxisProjectionPlot
if (axis != 'z') and (axis != 'y') and (axis != 'x'):
p = OffAxisProjectionPlot(ds,
axis,
variable,
width=(width, units),
weight_field=weight_variable)
#plot = p.plots[variable]
#fig = plot.figure
#f = BytesIO()
#vv = yt.write_image(np.log10(p.frb[variable][:,:-1].d),f, cmap_name = color_map)
p.hide_axes()
p.hide_colorbar()
p.set_cmap(variable, color_map)
p._setup_plots()
plot = p.plots[variable]
plot.canvas.draw()
buff = plot.canvas.tostring_argb()
ncols, nrows = plot.canvas.get_width_height()
vv = np.fromstring(buff, dtype=np.uint8).reshape((nrows, ncols, 4),
order="C")
if show_annotations:
p = OffAxisProjectionPlot(ds,
axis,
variable,
width=(width, units),
weight_field=weight_variable)
p.set_cmap(variable, color_map)
p._setup_plots()
plot = p.plots[variable]
plot.canvas.draw()
buff2 = plot.canvas.tostring_argb()
ncols2, nrows2 = plot.canvas.get_width_height()
vv2 = np.fromstring(buff2, dtype=np.uint8).reshape(
(nrows2, ncols2, 4), order="C")
#plot.canvas.draw()
#buff = plot.canvas.tostring_argb()
#ncols2, nrows2 = plot.canvas.get_width_height()
#vv2 = np.fromstring(buff, dtype=np.uint8).reshape((nrows2, ncols2, 4), order="C")
else:
p = ProjectionPlot(ds,
axis,
variable,
center=center,
width=(width, units),
weight_field=weight_variable)
#plot = p.plots[variable]
#fig = plot.figure
#f = BytesIO()
#vv = yt.write_image(np.log10(p.frb[variable][:,:-1].d),f, cmap_name = color_map)
p.hide_axes()
p.hide_colorbar()
p.set_cmap(variable, color_map)
p._setup_plots()
plot = p.plots[variable]
plot.canvas.draw()
buff = plot.canvas.tostring_argb()
ncols, nrows = plot.canvas.get_width_height()
vv = np.fromstring(buff, dtype=np.uint8).reshape((nrows, ncols, 4),
order="C")
if show_annotations:
p = ProjectionPlot(ds,
axis,
variable,
center=center,
width=(width, units),
weight_field=weight_variable)
p.set_cmap(variable, color_map)
p._setup_plots()
plot = p.plots[variable]
plot.canvas.draw()
buff2 = plot.canvas.tostring_argb()
ncols2, nrows2 = plot.canvas.get_width_height()
vv2 = np.fromstring(buff2, dtype=np.uint8).reshape(
(nrows2, ncols2, 4), order="C")
#plot.canvas.draw()
#buff = plot.canvas.tostring_argb()
#ncols2, nrows2 = plot.canvas.get_width_height()
#vv2 = np.fromstring(buff, dtype=np.uint8).reshape((nrows2, ncols2, 4), order="C")
ncols = vv.shape[1]
nrows = vv.shape[0]
# delete if already there
for im in bpy.data.images:
if im.name == image_name:
delete_unused_images(image_name)
delete_unused_textures(image_name)
delete_unused_materials(image_name)
# for annotations
for im in bpy.data.images:
if im.name == image_name + '_ann':
delete_unused_images(image_name + '_ann')
delete_unused_textures(image_name + '_ann')
delete_unused_materials(image_name + '_ann')
# switching a from back to front, and flipping image
# if also with annotation do a nice one in the domain
pixels_tmp = np.array(vv)
for i in range(0, nrows):
#pixels_tmp[i,:,0] = vv[i,:,0]
#pixels_tmp[i,:,1] = vv[i,:,1]
#pixels_tmp[i,:,2] = vv[i,:,2]
#pixels_tmp[i,:,3] = vv[i,:,3]
pixels_tmp[i, :, 3] = vv[nrows - 1 - i, :, 0]
pixels_tmp[i, :, 0] = vv[nrows - 1 - i, :, 1]
pixels_tmp[i, :, 1] = vv[nrows - 1 - i, :, 2]
pixels_tmp[i, :, 2] = vv[nrows - 1 - i, :, 3]
if show_annotations:
pixels_tmp2 = np.array(vv2)
if show_annotations:
for i in range(0, nrows2):
pixels_tmp2[i, :, 3] = vv2[nrows2 - 1 - i, :, 0]
pixels_tmp2[i, :, 0] = vv2[nrows2 - 1 - i, :, 1]
pixels_tmp2[i, :, 1] = vv2[nrows2 - 1 - i, :, 2]
pixels_tmp2[i, :, 2] = vv2[nrows2 - 1 - i, :, 3]
# blank image
image = bpy.data.images.new(image_name, width=ncols, height=nrows)
if show_annotations:
image2 = bpy.data.images.new(image_name + '_ann',
width=ncols2,
height=nrows2)
pixels = pixels_tmp.ravel() / 255.
#pixels = vv.ravel()/255.
if show_annotations:
pixels2 = pixels_tmp2.ravel() / 255.
image.pixels = pixels
if show_annotations:
image2.pixels = pixels2
# activate the image in the uv editor
for area in bpy.context.screen.areas:
if area.type == 'IMAGE_EDITOR':
if show_annotations:
area.spaces.active.image = image2
else:
area.spaces.active.image = image
elif area.type == 'VIEW_3D': # make sure material/render view is on
for space in area.spaces:
if space.type == 'VIEW_3D':
if (space.viewport_shade != 'RENDERED') and (
space.viewport_shade != 'MATERIAL'):
space.viewport_shade = 'RENDERED' # material is too slow
# also, attach to the projection in the blender 3d window
# now, set color
figmat = makeMaterial(image_name, (0, 0, 0), (1, 1, 1), 1.0,
0.0) # no emissivity or transperency for now
setMaterial(bpy.data.objects[image_name], figmat)
# also, make shadeless
bpy.data.materials[image_name].use_shadeless = True
# Create image texture from image
cTex = bpy.data.textures.new(image_name, type='IMAGE')
cTex.image = image
# Add texture slot for color texture
mat = bpy.data.materials[image_name]
mtex = mat.texture_slots.add()
mtex.texture = cTex
#mtex.texture_coords = 'UV'
mtex.texture_coords = 'OBJECT' # this seems to work better for figures, but certainly needs to be tested
mtex.use_map_color_diffuse = True
mtex.use_map_color_emission = True
mtex.emission_color_factor = 0.5
mtex.use_map_density = True
mtex.mapping = 'FLAT'
# map to object
mtex.object = bpy.data.objects[image_name]