示例#1
0
def add_env(self, key, value):
    '''add a key/value pair to the environment. Should begin with SCIF
       to maintain proper namespace

    Parameters
    ==========
    key: the environment variable name. For SCIF, slashes should be 
         removed and replaced with underscore.
    value: the value to set for the environment variable

    '''    
    if not hasattr(self,'environment'):
        self.environment = dict()

    if not key.startswith('SCIF'):
        msg = 'Environment variable outside SCIF namespace not recommended.'
        bot.warning(msg)

    # If the variable already exists, status is "update"
    action = 'new'
    if key in self.environment:
        action = 'update'

    self.environment[key] = value
    bot.debug('[environment:%s][%s=%s]' %(action, key, value))
示例#2
0
文件: commands.py 项目: samcmill/scif
def run(self, app=None, args=None):
    """run an app. This means the following:

    1. Check that the app is valid for the client. Don't proceed otherwise
    2. Set the client app to be active
    3. update the environment to indicate the app is active
    4. set the entry point and entry folder relevant to the app

    Parameters
    ==========
    app: the name of the scif app to run
    args: a list of one or more additional arguments to pass to runscript

    """
    interactive = False
    config = self.app(app)
    if "apprun" not in config:
        bot.debug("%s does not have a runscript." % app)
        interactive = True

    self.activate(app, args=args)  # checks for existence
    # sets _active to app's name
    # updates environment
    # sets entrypoint
    # sets entryfolder

    return self._exec(app, interactive=interactive)
示例#3
0
文件: parser.py 项目: satra/scif
def load_recipe(path):
    '''load will return a loaded in (user) scif configuration file

    Parameters
    ==========
    path: a path to a deid file

    Returns
    =======
    config: a parsed recipe configuration for SCIF
    '''

    path = os.path.abspath(path)
    if os.path.exists(path):

        # Read in spec, clean up extra spaces and newlines
        spec = [
            x.strip('\n').strip(' ') for x in read_file(path)
            if x.strip('\n').strip(' ') not in ['']
        ]

        spec = [x for x in spec if x not in ['', None]]
        config = OrderedDict()
        section = None
        name = None

        while len(spec) > 0:

            # Clean up white trailing/leading space
            line = spec.pop(0).strip()

            # Comment
            if line.startswith("#"):
                continue

            # A new section?
            elif line.startswith('%'):

                # Remove any comments
                line = line.split('#', 1)[0].strip()

                # Is there a section name?
                parts = line.split(' ')
                if len(parts) > 1:
                    name = ' '.join(parts[1:])
                section = re.sub('[%]|(\s+)', '', parts[0]).lower()
                config = add_section(config=config, section=section, name=name)

            # If we have a section, and are adding it
            elif section is not None:
                spec = [line] + spec
                config = read_section(config=config,
                                      spec=spec,
                                      section=section,
                                      name=name)

    else:
        bot.debug("Cannot find recipe file %s" % path)
    return config
示例#4
0
文件: parser.py 项目: satra/scif
def add_section(config, section, name=None):
    '''add section will add a section (and optionally)
    section name to a config

    Parameters
    ==========
    config: the config (dict) parsed thus far
    section: the section type (e.g., appinstall)
    name: an optional name, added as a level (e.g., google-drive)

    Resulting data structure is:

            config['registry']['apprun']
            config[name][section]

    '''

    if section is None:
        bot.error(
            'You must define a section (e.g. %appenv) before any action.')
        sys.exit(1)

    if section not in sections:
        bot.error("%s is not a valid section." % section)
        sys.exit(1)

    global_section = 'apps'

    # Add the global section, if doesn't exist
    if global_section not in config:
        config[global_section] = OrderedDict()

    if name is not None:
        if name not in config[global_section]:
            config[global_section][name] = OrderedDict()

        if section not in config[global_section][name]:
            config[global_section][name][section] = []
            bot.debug("Adding section %s %s" % (name, section))

    return config
示例#5
0
def load_recipe(path):
    '''load will return a loaded in (user) scif configuration file

        Parameters
        ==========
        path: a path to a scif recipe file

        Returns
        =======
        config: a parsed recipe configuration for SCIF
    '''

    path = os.path.abspath(path)
    if os.path.exists(path):

        # Read in spec, skip empty lines, don't strip remaining
        spec = [
            x.strip('\n') for x in read_file(path)
            if not re.match(r'^\s+$', x.strip('\n'))
        ]

        spec = [x for x in spec if x not in ['', None]]
        config = OrderedDict()
        section = None
        name = None

        while len(spec) > 0:

            # Clean up white trailing/leading space
            line = spec.pop(0)
            stripped = line.strip()

            # Comment
            if stripped.startswith("#"):
                continue

            # A new section?
            elif stripped.startswith('%'):

                # Remove any comments
                line = line.split('#', 1)[0].strip()

                # Is there a section name?
                parts = line.split(' ')
                if len(parts) > 1:
                    name = ' '.join(parts[1:])
                section = re.sub(r'[%]|(\s+)', '', parts[0]).lower()
                config = add_section(config=config, section=section, name=name)

            # If we have a section, and are adding it
            elif section is not None:
                spec = [line] + spec
                config = read_section(config=config,
                                      spec=spec,
                                      section=section,
                                      name=name)

        # Make sure app environments are sourced as first line of recipe
        config = finish_recipe(config)

    else:
        bot.debug("Cannot find recipe file %s" % path)
    return config