def test_build_search_order1(self):
""" MODULE in search path should be replaced by module_dir.
"""
q = catalog.catalog(['first','MODULE','third'])
q.set_module_directory('second')
order = q.build_search_order()
assert_(order == ['first','second','third',catalog.default_dir()])
def test_build_search_order3(self):
""" If MODULE is absent, module_dir shouldn't be in search path.
"""
q = catalog.catalog(['first','second'])
q.set_module_directory('third')
order = q.build_search_order()
assert_(order == ['first','second',catalog.default_dir()])
def empty_temp_dir():
"""Create a sub directory in the temp directory for use in tests"""
d = catalog.default_dir()
for i in range(10000):
new_d = os.path.join(d,tempfile.gettempprefix()[1:-1]+repr(i))
if not os.path.exists(new_d):
os.mkdir(new_d)
break
return new_d
def test_is_writable(self):
path = catalog.default_dir()
name = os.path.join(path,'dummy_catalog')
test_file = open(name,'w')
try:
test_file.write('making sure default location is writable\n')
finally:
test_file.close()
os.remove(name)
def test_build_search_order4(self):
""" Make sure environment variable is getting used.
"""
q = catalog.catalog(['first','second'])
if sys.platform == 'win32': sep = ';'
else: sep = ':'
os.environ['PYTHONCOMPILED'] = sep.join(('MODULE','fourth','fifth'))
q.set_module_directory('third')
order = q.build_search_order()
assert(order == ['first','second','third','fourth','fifth',catalog.default_dir()])
def test_is_writable(self):
# default_dir has to be writable
path = catalog.default_dir()
name = os.path.join(path, 'dummy_catalog')
test_file = open(name, 'w')
try:
test_file.write('making sure default location is writable\n')
finally:
test_file.close()
os.remove(name)
def empty_temp_dir():
""" Create a sub directory in the temp directory for use in tests
"""
import tempfile
d = catalog.default_dir()
for i in range(10000):
new_d = os.path.join(d,tempfile.gettempprefix()[1:-1]+repr(i))
if not os.path.exists(new_d):
os.mkdir(new_d)
break
return new_d
def restore_temp_catalog(backup_dir):
"""Remove any catalog from the temp dir"""
cat_dir = catalog.default_dir()
for file in os.listdir(backup_dir):
file = os.path.join(backup_dir,file)
d,f = os.path.split(file)
dst_file = os.path.join(cat_dir, f)
if os.path.exists(dst_file):
os.remove(dst_file)
move_file(file,dst_file)
os.rmdir(backup_dir)
def restore_temp_catalog(backup_dir):
"""Remove any catalog from the temp dir"""
cat_dir = catalog.default_dir()
for file in os.listdir(backup_dir):
file = os.path.join(backup_dir, file)
d, f = os.path.split(file)
dst_file = os.path.join(cat_dir, f)
if os.path.exists(dst_file):
os.remove(dst_file)
move_file(file, dst_file)
os.rmdir(backup_dir)
def test_build_search_order2(self):
""" MODULE in search path should be removed if module_dir==None.
"""
q = catalog.catalog(['first','MODULE','third'])
order = q.build_search_order()
assert_(order == ['first','third',catalog.default_dir()])
def test_build_search_order3(self):
# If MODULE is absent, module_dir shouldn't be in search path.
q = catalog.catalog(['first','second'])
q.set_module_directory('third')
order = q.build_search_order()
assert_(order == ['first','second',catalog.default_dir()])
def test_build_search_order1(self):
# MODULE in search path should be replaced by module_dir.
q = catalog.catalog(['first','MODULE','third'])
q.set_module_directory('second')
order = q.build_search_order()
assert_(order == ['first','second','third',catalog.default_dir()])
def test_default(self):
in_path = catalog.default_dir()
path = catalog.catalog_path(in_path)
d, f = os.path.split(path)
assert_(d == in_path)
assert_(f == catalog.os_dependent_catalog_name())
def test_build_search_order2(self):
""" MODULE in search path should be removed if module_dir==None.
"""
q = catalog.catalog(['first', 'MODULE', 'third'])
order = q.build_search_order()
assert_(order == ['first', 'third', catalog.default_dir()])
def get_weave_cache_dir():
if weave is not None:
return default_dir()
else:
return None
def temp_catalog_files(prefix=''):
# might need to add some more platform specific catalog file
# suffixes to remove. The .pag was recently added for SunOS
d = catalog.default_dir()
f = catalog.os_dependent_catalog_name()
return glob.glob(os.path.join(d,prefix+f+'*'))
def get_weave_cache_dir():
if weave is not None:
return default_dir()
else:
return None
def test_default(self):
in_path = catalog.default_dir()
path = catalog.catalog_path(in_path)
d,f = os.path.split(path)
assert_(d == in_path)
assert_(f == catalog.os_dependent_catalog_name())
from error_eval import ErrorEval
from itertools import combinations, chain
from matplotlib import rc
from socket import gethostname
from spirrid import SPIRRID
from scipy import stats, polyval
import numpy as np
import os.path
import pylab as p # import matplotlib with matlab interface
import types
import shutil
from os.path import expanduser
from scipy.weave.catalog import default_dir
HOME_DIR = expanduser("~")
PYTHON_COMPILED_DIR = default_dir()
#===============================================================================
# Helper functions
#===============================================================================
def Heaviside(x):
''' Heaviside function '''
return x >= 0
def powerset(iterable):
'''
Return object of all combination of iterable.
powerset([1,2,3]) --> () (1,) (2,) (3,) (1,2) (1,3) (2,3) (1,2,3)
'''
s = list(iterable)
return chain.from_iterable(combinations(s, r) for r in range(len(s) + 1))