def build_institute(internal_id, display_name, sanger_recipients=None, coverage_cutoff=None, frequency_cutoff=None): """Build a institute object Args: internal_id(str) display_name(str) sanger_recipients(list(str)): List with email addresses Returns: institute_obj(scout.models.Institute) """ LOG.info("Building institute %s with display name %s", internal_id,display_name) institute_obj = Institute( internal_id=internal_id, display_name=display_name, sanger_recipients=sanger_recipients, coverage_cutoff = coverage_cutoff, frequency_cutoff = frequency_cutoff ) for key in list(institute_obj): if institute_obj[key] is None: institute_obj.pop(key) return institute_obj
def build_institute(internal_id, display_name, sanger_recipients=None, coverage_cutoff=None, frequency_cutoff=None): """Build a institute object Args: internal_id(str) display_name(str) sanger_recipients(list(str)): List with email addresses Returns: institute_obj(scout.models.Institute) """ LOG.info("Building institute %s with display name %s", internal_id, display_name) institute_obj = Institute(internal_id=internal_id, display_name=display_name, sanger_recipients=sanger_recipients, coverage_cutoff=coverage_cutoff, frequency_cutoff=frequency_cutoff) for key in list(institute_obj): if institute_obj[key] is None: institute_obj.pop(key) return institute_obj
def build_institute( internal_id, display_name, loqusdb_id=None, sanger_recipients=None, collaborators=None, phenotype_groups=None, cohorts=None, coverage_cutoff=None, frequency_cutoff=None, ): """Build a institute object Args: internal_id(str) display_name(str) sanger_recipients(list(str)): List with email addresses collaborators(list(str)): List of institute _id to enable sharing with phenotype_groups(list(phenotype)): List of phenotype groups cohorts(list(str)): List of cohorts Returns: institute_obj(scout.models.Institute) """ LOG.info("Building institute %s with display name %s", internal_id, display_name) institute_obj = Institute( internal_id=internal_id, display_name=display_name, sanger_recipients=sanger_recipients, loqusdb_id=loqusdb_id, collaborators=collaborators, phenotype_groups=phenotype_groups, cohorts=cohorts, coverage_cutoff=coverage_cutoff, frequency_cutoff=frequency_cutoff, ) for key in list(institute_obj): if institute_obj[key] is None: institute_obj.pop(key) return institute_obj