def test_sv_frequencies_gnomad_exac():
## GIVEN a variant object with gnomad annotation
var = {"exac_frequency": 0.01, "category": "sv"}
## WHEN parsing the sv frequencies
freq = frequencies(var)
## THEN assert the correct tuple is returned
assert len(freq) == 1
assert freq[0] == ("GnomAD", var.get("exac_frequency"), None)
def test_sv_frequencies_all():
## GIVEN a variant object with gnomad annotation
var = {
"gnomad_frequency": 0.02,
"clingen_cgh_benign": 0.02,
"clingen_cgh_pathogenic": 0.02,
"clingen_ngi": 0.02,
"clingen_mip": 0.02,
"swegen": 0.02,
"decipher": 0.02,
"thousand_genomes_frequency": 0.02,
"category": "sv",
}
## WHEN parsing the sv frequencies
freq = frequencies(var)
## THEN assert the correct tuple is returned
assert len(freq) == 8
for annotation in freq:
assert annotation[1] == 0.02