Python summarize_contents示例

编程语言: Python

命名空间/包名称: script

方法/功能: summarize_contents

hotexamples.com的示例: 5

Python summarize_contents - 已找到5个示例。这些是从开源项目中提取的最受好评的script.summarize_contents现实Python示例。您可以评价示例，以帮助我们提高示例质量。

示例#1

显示文件

文件： test_script.py 项目： supernova311/ejercicio-biopython

class MiPrueba(unittest.TestCase):
  def test_summarize_contents(self):
   s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
   self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/AF323668.gbk"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/m_cold.fasta"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/NC_002703.gbk"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/opuntia.fasta"))
  self.assertDictEqual({""})

示例#2

显示文件

	def test_summarize_contents(self):
		# Archivos genbank
		AF323668 = {'file:':'AF323668.gbk','path:': os.path.abspath('data'),'num_records:': 1,'names:':['AF323668'],'IDs:':['AF323668.1'],'descriptions:':['Bacteriophage bIL285, complete genome']} 
		s = script.summarize_contents(os.path.abspath("data/AF323668.gbk"))
		self.assertDictEqual(AF323668, s)
		
		NC_002703 = {'file:': 'NC_002703.gbk', 'path:': os.path.abspath('data'), 'num_records:': 1, 'names:': ['NC_002703'], 'IDs:': ['NC_002703.1'], 'descriptions:': ['Lactococcus phage Tuc2009, complete genome']}
		s = script.summarize_contents(os.path.abspath("data/NC_002703.gbk"))
		self.assertDictEqual(NC_002703, s)
		
		ls_orchid_1 = {'file:': 'ls_orchid.gbk', 'path:': os.path.abspath('data'), 'num_records:': 94, 'names:': ['Z78533', 'Z78532', 'Z78531', 'Z78530', 'Z78529', 'Z78527', 'Z78526', 'Z78525', 'Z78524', 'Z78523', 'Z78522', 'Z78521', 'Z78520', 'Z78519', 'Z78518', 'Z78517', 'Z78516', 'Z78515', 'Z78514', 'Z78513', 'Z78512', 'Z78511', 'Z78510', 'Z78509', 'Z78508', 'Z78507', 'Z78506', 'Z78505', 'Z78504', 'Z78503', 'Z78502', 'Z78501', 'Z78500', 'Z78499', 'Z78498', 'Z78497', 'Z78496', 'Z78495', 'Z78494', 'Z78493', 'Z78492', 'Z78491', 'Z78490', 'Z78489', 'Z78488', 'Z78487', 'Z78486', 'Z78485', 'Z78484', 'Z78483', 'Z78482', 'Z78481', 'Z78480', 'Z78479', 'Z78478', 'Z78477', 'Z78476', 'Z78475', 'Z78474', 'Z78473', 'Z78472', 'Z78471', 'Z78470', 'Z78469', 'Z78468', 'Z78467', 'Z78466', 'Z78465', 'Z78464', 'Z78463', 'Z78462', 'Z78461', 'Z78460', 'Z78459', 'Z78458', 'Z78457', 'Z78456', 'Z78455', 'Z78454', 'Z78453', 'Z78452', 'Z78451', 'Z78450', 'Z78449', 'Z78448', 'Z78447', 'Z78446', 'Z78445', 'Z78444', 'Z78443', 'Z78442', 'Z78441', 'Z78440', 'Z78439'], 'IDs:': ['Z78533.1', 'Z78532.1', 'Z78531.1', 'Z78530.1', 'Z78529.1', 'Z78527.1', 'Z78526.1', 'Z78525.1', 'Z78524.1', 'Z78523.1', 'Z78522.1', 'Z78521.1', 'Z78520.1', 'Z78519.1', 'Z78518.1', 'Z78517.1', 'Z78516.1', 'Z78515.1', 'Z78514.1', 'Z78513.1', 'Z78512.1', 'Z78511.1', 'Z78510.1', 'Z78509.1', 'Z78508.1', 'Z78507.1', 'Z78506.1', 'Z78505.1', 'Z78504.1', 'Z78503.1', 'Z78502.1', 'Z78501.1', 'Z78500.1', 'Z78499.1', 'Z78498.1', 'Z78497.1', 'Z78496.1', 'Z78495.1', 'Z78494.1', 'Z78493.1', 'Z78492.1', 'Z78491.1', 'Z78490.1', 'Z78489.1', 'Z78488.1', 'Z78487.1', 'Z78486.1', 'Z78485.1', 'Z78484.1', 'Z78483.1', 'Z78482.1', 'Z78481.1', 'Z78480.1', 'Z78479.1', 'Z78478.1', 'Z78477.1', 'Z78476.1', 'Z78475.1', 'Z78474.1', 'Z78473.1', 'Z78472.1', 'Z78471.1', 'Z78470.1', 'Z78469.1', 'Z78468.1', 'Z78467.1', 'Z78466.1', 'Z78465.1', 'Z78464.1', 'Z78463.1', 'Z78462.1', 'Z78461.1', 'Z78460.1', 'Z78459.1', 'Z78458.1', 'Z78457.1', 'Z78456.1', 'Z78455.1', 'Z78454.1', 'Z78453.1', 'Z78452.1', 'Z78451.1', 'Z78450.1', 'Z78449.1', 'Z78448.1', 'Z78447.1', 'Z78446.1', 'Z78445.1', 'Z78444.1', 'Z78443.1', 'Z78442.1', 'Z78441.1', 'Z78440.1', 'Z78439.1'], 'descriptions:': ['C.irapeanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.californicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.fasciculatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.margaritaceum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.lichiangense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.yatabeanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.guttatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.acaule 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.formosanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.himalaicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.macranthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.calceolus 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.segawai 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.pubescens 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.reginae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.flavum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'C.passerinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'M.xerophyticum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.schlimii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.besseae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.wallisii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.exstaminodium 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.caricinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.pearcei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.longifolium 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.lindenii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.lindleyanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.sargentianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.kaiteurum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.czerwiakowianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.boissierianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.caudatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.warszewiczianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.micranthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.malipoense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.delenatii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.armeniacum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.emersonii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.niveum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.godefroyae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.bellatulum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.concolor 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.fairrieanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.druryi 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.tigrinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.hirsutissimum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.barbigerum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.henryanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.charlesworthii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.villosum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.exul 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.insigne 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.gratrixianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.primulinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.victoria 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.victoria 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.glaucophyllum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.supardii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.kolopakingii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.sanderianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.lowii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.dianthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.parishii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.haynaldianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.adductum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.stonei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.philippinense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.rothschildianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.glanduliferum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.glanduliferum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.sukhakulii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.wardii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.ciliolare 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.dayanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.hennisianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.callosum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.tonsum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.javanicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.fowliei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.schoseri 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.bougainvilleanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.hookerae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.papuanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.mastersianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.argus 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.venustum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.acmodontum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.urbanianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.appletonianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.lawrenceanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.bullenianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.superbiens 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.purpuratum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'P.barbatum 5.8S rRNA gene and ITS1 and ITS2 DNA']}
		s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
		self.assertDictEqual(ls_orchid_1, s)
		
		# Archivos fasta
		ls_orchid_2 = {'file:': 'ls_orchid.fasta', 'path:': os.path.abspath('data'), 'num_records:': 94, 'names:': ['gi|2765658|emb|Z78533.1|CIZ78533', 'gi|2765657|emb|Z78532.1|CCZ78532', 'gi|2765656|emb|Z78531.1|CFZ78531', 'gi|2765655|emb|Z78530.1|CMZ78530', 'gi|2765654|emb|Z78529.1|CLZ78529', 'gi|2765652|emb|Z78527.1|CYZ78527', 'gi|2765651|emb|Z78526.1|CGZ78526', 'gi|2765650|emb|Z78525.1|CAZ78525', 'gi|2765649|emb|Z78524.1|CFZ78524', 'gi|2765648|emb|Z78523.1|CHZ78523', 'gi|2765647|emb|Z78522.1|CMZ78522', 'gi|2765646|emb|Z78521.1|CCZ78521', 'gi|2765645|emb|Z78520.1|CSZ78520', 'gi|2765644|emb|Z78519.1|CPZ78519', 'gi|2765643|emb|Z78518.1|CRZ78518', 'gi|2765642|emb|Z78517.1|CFZ78517', 'gi|2765641|emb|Z78516.1|CPZ78516', 'gi|2765640|emb|Z78515.1|MXZ78515', 'gi|2765639|emb|Z78514.1|PSZ78514', 'gi|2765638|emb|Z78513.1|PBZ78513', 'gi|2765637|emb|Z78512.1|PWZ78512', 'gi|2765636|emb|Z78511.1|PEZ78511', 'gi|2765635|emb|Z78510.1|PCZ78510', 'gi|2765634|emb|Z78509.1|PPZ78509', 'gi|2765633|emb|Z78508.1|PLZ78508', 'gi|2765632|emb|Z78507.1|PLZ78507', 'gi|2765631|emb|Z78506.1|PLZ78506', 'gi|2765630|emb|Z78505.1|PSZ78505', 'gi|2765629|emb|Z78504.1|PKZ78504', 'gi|2765628|emb|Z78503.1|PCZ78503', 'gi|2765627|emb|Z78502.1|PBZ78502', 'gi|2765626|emb|Z78501.1|PCZ78501', 'gi|2765625|emb|Z78500.1|PWZ78500', 'gi|2765624|emb|Z78499.1|PMZ78499', 'gi|2765623|emb|Z78498.1|PMZ78498', 'gi|2765622|emb|Z78497.1|PDZ78497', 'gi|2765621|emb|Z78496.1|PAZ78496', 'gi|2765620|emb|Z78495.1|PEZ78495', 'gi|2765619|emb|Z78494.1|PNZ78494', 'gi|2765618|emb|Z78493.1|PGZ78493', 'gi|2765617|emb|Z78492.1|PBZ78492', 'gi|2765616|emb|Z78491.1|PCZ78491', 'gi|2765615|emb|Z78490.1|PFZ78490', 'gi|2765614|emb|Z78489.1|PDZ78489', 'gi|2765613|emb|Z78488.1|PTZ78488', 'gi|2765612|emb|Z78487.1|PHZ78487', 'gi|2765611|emb|Z78486.1|PBZ78486', 'gi|2765610|emb|Z78485.1|PHZ78485', 'gi|2765609|emb|Z78484.1|PCZ78484', 'gi|2765608|emb|Z78483.1|PVZ78483', 'gi|2765607|emb|Z78482.1|PEZ78482', 'gi|2765606|emb|Z78481.1|PIZ78481', 'gi|2765605|emb|Z78480.1|PGZ78480', 'gi|2765604|emb|Z78479.1|PPZ78479', 'gi|2765603|emb|Z78478.1|PVZ78478', 'gi|2765602|emb|Z78477.1|PVZ78477', 'gi|2765601|emb|Z78476.1|PGZ78476', 'gi|2765600|emb|Z78475.1|PSZ78475', 'gi|2765599|emb|Z78474.1|PKZ78474', 'gi|2765598|emb|Z78473.1|PSZ78473', 'gi|2765597|emb|Z78472.1|PLZ78472', 'gi|2765596|emb|Z78471.1|PDZ78471', 'gi|2765595|emb|Z78470.1|PPZ78470', 'gi|2765594|emb|Z78469.1|PHZ78469', 'gi|2765593|emb|Z78468.1|PAZ78468', 'gi|2765592|emb|Z78467.1|PSZ78467', 'gi|2765591|emb|Z78466.1|PPZ78466', 'gi|2765590|emb|Z78465.1|PRZ78465', 'gi|2765589|emb|Z78464.1|PGZ78464', 'gi|2765588|emb|Z78463.1|PGZ78463', 'gi|2765587|emb|Z78462.1|PSZ78462', 'gi|2765586|emb|Z78461.1|PWZ78461', 'gi|2765585|emb|Z78460.1|PCZ78460', 'gi|2765584|emb|Z78459.1|PDZ78459', 'gi|2765583|emb|Z78458.1|PHZ78458', 'gi|2765582|emb|Z78457.1|PCZ78457', 'gi|2765581|emb|Z78456.1|PTZ78456', 'gi|2765580|emb|Z78455.1|PJZ78455', 'gi|2765579|emb|Z78454.1|PFZ78454', 'gi|2765578|emb|Z78453.1|PSZ78453', 'gi|2765577|emb|Z78452.1|PBZ78452', 'gi|2765576|emb|Z78451.1|PHZ78451', 'gi|2765575|emb|Z78450.1|PPZ78450', 'gi|2765574|emb|Z78449.1|PMZ78449', 'gi|2765573|emb|Z78448.1|PAZ78448', 'gi|2765572|emb|Z78447.1|PVZ78447', 'gi|2765571|emb|Z78446.1|PAZ78446', 'gi|2765570|emb|Z78445.1|PUZ78445', 'gi|2765569|emb|Z78444.1|PAZ78444', 'gi|2765568|emb|Z78443.1|PLZ78443', 'gi|2765567|emb|Z78442.1|PBZ78442', 'gi|2765566|emb|Z78441.1|PSZ78441', 'gi|2765565|emb|Z78440.1|PPZ78440', 'gi|2765564|emb|Z78439.1|PBZ78439'], 'IDs:': ['gi|2765658|emb|Z78533.1|CIZ78533', 'gi|2765657|emb|Z78532.1|CCZ78532', 'gi|2765656|emb|Z78531.1|CFZ78531', 'gi|2765655|emb|Z78530.1|CMZ78530', 'gi|2765654|emb|Z78529.1|CLZ78529', 'gi|2765652|emb|Z78527.1|CYZ78527', 'gi|2765651|emb|Z78526.1|CGZ78526', 'gi|2765650|emb|Z78525.1|CAZ78525', 'gi|2765649|emb|Z78524.1|CFZ78524', 'gi|2765648|emb|Z78523.1|CHZ78523', 'gi|2765647|emb|Z78522.1|CMZ78522', 'gi|2765646|emb|Z78521.1|CCZ78521', 'gi|2765645|emb|Z78520.1|CSZ78520', 'gi|2765644|emb|Z78519.1|CPZ78519', 'gi|2765643|emb|Z78518.1|CRZ78518', 'gi|2765642|emb|Z78517.1|CFZ78517', 'gi|2765641|emb|Z78516.1|CPZ78516', 'gi|2765640|emb|Z78515.1|MXZ78515', 'gi|2765639|emb|Z78514.1|PSZ78514', 'gi|2765638|emb|Z78513.1|PBZ78513', 'gi|2765637|emb|Z78512.1|PWZ78512', 'gi|2765636|emb|Z78511.1|PEZ78511', 'gi|2765635|emb|Z78510.1|PCZ78510', 'gi|2765634|emb|Z78509.1|PPZ78509', 'gi|2765633|emb|Z78508.1|PLZ78508', 'gi|2765632|emb|Z78507.1|PLZ78507', 'gi|2765631|emb|Z78506.1|PLZ78506', 'gi|2765630|emb|Z78505.1|PSZ78505', 'gi|2765629|emb|Z78504.1|PKZ78504', 'gi|2765628|emb|Z78503.1|PCZ78503', 'gi|2765627|emb|Z78502.1|PBZ78502', 'gi|2765626|emb|Z78501.1|PCZ78501', 'gi|2765625|emb|Z78500.1|PWZ78500', 'gi|2765624|emb|Z78499.1|PMZ78499', 'gi|2765623|emb|Z78498.1|PMZ78498', 'gi|2765622|emb|Z78497.1|PDZ78497', 'gi|2765621|emb|Z78496.1|PAZ78496', 'gi|2765620|emb|Z78495.1|PEZ78495', 'gi|2765619|emb|Z78494.1|PNZ78494', 'gi|2765618|emb|Z78493.1|PGZ78493', 'gi|2765617|emb|Z78492.1|PBZ78492', 'gi|2765616|emb|Z78491.1|PCZ78491', 'gi|2765615|emb|Z78490.1|PFZ78490', 'gi|2765614|emb|Z78489.1|PDZ78489', 'gi|2765613|emb|Z78488.1|PTZ78488', 'gi|2765612|emb|Z78487.1|PHZ78487', 'gi|2765611|emb|Z78486.1|PBZ78486', 'gi|2765610|emb|Z78485.1|PHZ78485', 'gi|2765609|emb|Z78484.1|PCZ78484', 'gi|2765608|emb|Z78483.1|PVZ78483', 'gi|2765607|emb|Z78482.1|PEZ78482', 'gi|2765606|emb|Z78481.1|PIZ78481', 'gi|2765605|emb|Z78480.1|PGZ78480', 'gi|2765604|emb|Z78479.1|PPZ78479', 'gi|2765603|emb|Z78478.1|PVZ78478', 'gi|2765602|emb|Z78477.1|PVZ78477', 'gi|2765601|emb|Z78476.1|PGZ78476', 'gi|2765600|emb|Z78475.1|PSZ78475', 'gi|2765599|emb|Z78474.1|PKZ78474', 'gi|2765598|emb|Z78473.1|PSZ78473', 'gi|2765597|emb|Z78472.1|PLZ78472', 'gi|2765596|emb|Z78471.1|PDZ78471', 'gi|2765595|emb|Z78470.1|PPZ78470', 'gi|2765594|emb|Z78469.1|PHZ78469', 'gi|2765593|emb|Z78468.1|PAZ78468', 'gi|2765592|emb|Z78467.1|PSZ78467', 'gi|2765591|emb|Z78466.1|PPZ78466', 'gi|2765590|emb|Z78465.1|PRZ78465', 'gi|2765589|emb|Z78464.1|PGZ78464', 'gi|2765588|emb|Z78463.1|PGZ78463', 'gi|2765587|emb|Z78462.1|PSZ78462', 'gi|2765586|emb|Z78461.1|PWZ78461', 'gi|2765585|emb|Z78460.1|PCZ78460', 'gi|2765584|emb|Z78459.1|PDZ78459', 'gi|2765583|emb|Z78458.1|PHZ78458', 'gi|2765582|emb|Z78457.1|PCZ78457', 'gi|2765581|emb|Z78456.1|PTZ78456', 'gi|2765580|emb|Z78455.1|PJZ78455', 'gi|2765579|emb|Z78454.1|PFZ78454', 'gi|2765578|emb|Z78453.1|PSZ78453', 'gi|2765577|emb|Z78452.1|PBZ78452', 'gi|2765576|emb|Z78451.1|PHZ78451', 'gi|2765575|emb|Z78450.1|PPZ78450', 'gi|2765574|emb|Z78449.1|PMZ78449', 'gi|2765573|emb|Z78448.1|PAZ78448', 'gi|2765572|emb|Z78447.1|PVZ78447', 'gi|2765571|emb|Z78446.1|PAZ78446', 'gi|2765570|emb|Z78445.1|PUZ78445', 'gi|2765569|emb|Z78444.1|PAZ78444', 'gi|2765568|emb|Z78443.1|PLZ78443', 'gi|2765567|emb|Z78442.1|PBZ78442', 'gi|2765566|emb|Z78441.1|PSZ78441', 'gi|2765565|emb|Z78440.1|PPZ78440', 'gi|2765564|emb|Z78439.1|PBZ78439'], 'descriptions:': ['gi|2765658|emb|Z78533.1|CIZ78533 C.irapeanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765657|emb|Z78532.1|CCZ78532 C.californicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765656|emb|Z78531.1|CFZ78531 C.fasciculatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765655|emb|Z78530.1|CMZ78530 C.margaritaceum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765654|emb|Z78529.1|CLZ78529 C.lichiangense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765652|emb|Z78527.1|CYZ78527 C.yatabeanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765651|emb|Z78526.1|CGZ78526 C.guttatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765650|emb|Z78525.1|CAZ78525 C.acaule 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765649|emb|Z78524.1|CFZ78524 C.formosanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765648|emb|Z78523.1|CHZ78523 C.himalaicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765647|emb|Z78522.1|CMZ78522 C.macranthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765646|emb|Z78521.1|CCZ78521 C.calceolus 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765645|emb|Z78520.1|CSZ78520 C.segawai 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765644|emb|Z78519.1|CPZ78519 C.pubescens 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765643|emb|Z78518.1|CRZ78518 C.reginae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765642|emb|Z78517.1|CFZ78517 C.flavum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765641|emb|Z78516.1|CPZ78516 C.passerinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765640|emb|Z78515.1|MXZ78515 M.xerophyticum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765639|emb|Z78514.1|PSZ78514 P.schlimii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765638|emb|Z78513.1|PBZ78513 P.besseae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765637|emb|Z78512.1|PWZ78512 P.wallisii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765636|emb|Z78511.1|PEZ78511 P.exstaminodium 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765635|emb|Z78510.1|PCZ78510 P.caricinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765634|emb|Z78509.1|PPZ78509 P.pearcei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765633|emb|Z78508.1|PLZ78508 P.longifolium 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765632|emb|Z78507.1|PLZ78507 P.lindenii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765631|emb|Z78506.1|PLZ78506 P.lindleyanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765630|emb|Z78505.1|PSZ78505 P.sargentianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765629|emb|Z78504.1|PKZ78504 P.kaiteurum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765628|emb|Z78503.1|PCZ78503 P.czerwiakowianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765627|emb|Z78502.1|PBZ78502 P.boissierianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765626|emb|Z78501.1|PCZ78501 P.caudatum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765625|emb|Z78500.1|PWZ78500 P.warszewiczianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765624|emb|Z78499.1|PMZ78499 P.micranthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765623|emb|Z78498.1|PMZ78498 P.malipoense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765622|emb|Z78497.1|PDZ78497 P.delenatii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765621|emb|Z78496.1|PAZ78496 P.armeniacum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765620|emb|Z78495.1|PEZ78495 P.emersonii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765619|emb|Z78494.1|PNZ78494 P.niveum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765618|emb|Z78493.1|PGZ78493 P.godefroyae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765617|emb|Z78492.1|PBZ78492 P.bellatulum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765616|emb|Z78491.1|PCZ78491 P.concolor 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765615|emb|Z78490.1|PFZ78490 P.fairrieanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765614|emb|Z78489.1|PDZ78489 P.druryi 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765613|emb|Z78488.1|PTZ78488 P.tigrinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765612|emb|Z78487.1|PHZ78487 P.hirsutissimum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765611|emb|Z78486.1|PBZ78486 P.barbigerum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765610|emb|Z78485.1|PHZ78485 P.henryanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765609|emb|Z78484.1|PCZ78484 P.charlesworthii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765608|emb|Z78483.1|PVZ78483 P.villosum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765607|emb|Z78482.1|PEZ78482 P.exul 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765606|emb|Z78481.1|PIZ78481 P.insigne 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765605|emb|Z78480.1|PGZ78480 P.gratrixianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765604|emb|Z78479.1|PPZ78479 P.primulinum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765603|emb|Z78478.1|PVZ78478 P.victoria 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765602|emb|Z78477.1|PVZ78477 P.victoria 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765601|emb|Z78476.1|PGZ78476 P.glaucophyllum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765600|emb|Z78475.1|PSZ78475 P.supardii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765599|emb|Z78474.1|PKZ78474 P.kolopakingii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765598|emb|Z78473.1|PSZ78473 P.sanderianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765597|emb|Z78472.1|PLZ78472 P.lowii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765596|emb|Z78471.1|PDZ78471 P.dianthum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765595|emb|Z78470.1|PPZ78470 P.parishii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765594|emb|Z78469.1|PHZ78469 P.haynaldianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765593|emb|Z78468.1|PAZ78468 P.adductum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765592|emb|Z78467.1|PSZ78467 P.stonei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765591|emb|Z78466.1|PPZ78466 P.philippinense 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765590|emb|Z78465.1|PRZ78465 P.rothschildianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765589|emb|Z78464.1|PGZ78464 P.glanduliferum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765588|emb|Z78463.1|PGZ78463 P.glanduliferum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765587|emb|Z78462.1|PSZ78462 P.sukhakulii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765586|emb|Z78461.1|PWZ78461 P.wardii 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765585|emb|Z78460.1|PCZ78460 P.ciliolare 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765584|emb|Z78459.1|PDZ78459 P.dayanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765583|emb|Z78458.1|PHZ78458 P.hennisianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765582|emb|Z78457.1|PCZ78457 P.callosum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765581|emb|Z78456.1|PTZ78456 P.tonsum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765580|emb|Z78455.1|PJZ78455 P.javanicum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765579|emb|Z78454.1|PFZ78454 P.fowliei 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765578|emb|Z78453.1|PSZ78453 P.schoseri 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765577|emb|Z78452.1|PBZ78452 P.bougainvilleanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765576|emb|Z78451.1|PHZ78451 P.hookerae 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765575|emb|Z78450.1|PPZ78450 P.papuanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765574|emb|Z78449.1|PMZ78449 P.mastersianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765573|emb|Z78448.1|PAZ78448 P.argus 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765572|emb|Z78447.1|PVZ78447 P.venustum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765571|emb|Z78446.1|PAZ78446 P.acmodontum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765570|emb|Z78445.1|PUZ78445 P.urbanianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765569|emb|Z78444.1|PAZ78444 P.appletonianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765568|emb|Z78443.1|PLZ78443 P.lawrenceanum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765567|emb|Z78442.1|PBZ78442 P.bullenianum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765566|emb|Z78441.1|PSZ78441 P.superbiens 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765565|emb|Z78440.1|PPZ78440 P.purpuratum 5.8S rRNA gene and ITS1 and ITS2 DNA', 'gi|2765564|emb|Z78439.1|PBZ78439 P.barbatum 5.8S rRNA gene and ITS1 and ITS2 DNA']}
		s = script.summarize_contents(os.path.abspath("data/ls_orchid.fasta"))
		self.assertDictEqual(ls_orchid_2, s)

		m_cold = {'file:': 'm_cold.fasta', 'path:': os.path.abspath('data'), 'num_records:': 1, 'names:': ['gi|8332116|gb|BE037100.1|BE037100'], 'IDs:': ['gi|8332116|gb|BE037100.1|BE037100'], 'descriptions:': ["gi|8332116|gb|BE037100.1|BE037100 MP14H09 MP Mesembryanthemum crystallinum cDNA 5' similar to cold acclimation protein, mRNA sequence"]}
		s = script.summarize_contents(os.path.abspath("data/m_cold.fasta"))
		self.assertDictEqual(m_cold, s)

		opuntia = {'file:': 'opuntia.fasta', 'path:': os.path.abspath('data'), 'num_records:': 7, 'names:': ['gi|6273291|gb|AF191665.1|AF191665', 'gi|6273290|gb|AF191664.1|AF191664', 'gi|6273289|gb|AF191663.1|AF191663', 'gi|6273287|gb|AF191661.1|AF191661', 'gi|6273286|gb|AF191660.1|AF191660', 'gi|6273285|gb|AF191659.1|AF191659', 'gi|6273284|gb|AF191658.1|AF191658'], 'IDs:': ['gi|6273291|gb|AF191665.1|AF191665', 'gi|6273290|gb|AF191664.1|AF191664', 'gi|6273289|gb|AF191663.1|AF191663', 'gi|6273287|gb|AF191661.1|AF191661', 'gi|6273286|gb|AF191660.1|AF191660', 'gi|6273285|gb|AF191659.1|AF191659', 'gi|6273284|gb|AF191658.1|AF191658'], 'descriptions:': ['gi|6273291|gb|AF191665.1|AF191665 Opuntia marenae rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273290|gb|AF191664.1|AF191664 Opuntia clavata rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273289|gb|AF191663.1|AF191663 Opuntia bradtiana rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273287|gb|AF191661.1|AF191661 Opuntia kuehnrichiana rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273286|gb|AF191660.1|AF191660 Opuntia echinacea rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273285|gb|AF191659.1|AF191659 Opuntia pachypus rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence', 'gi|6273284|gb|AF191658.1|AF191658 Opuntia subulata rpl16 gene; chloroplast gene for chloroplast product, partial intron sequence']}
		s = script.summarize_contents(os.path.abspath("data/opuntia.fasta"))
		self.assertDictEqual(opuntia, s)

示例#3

显示文件

文件： test_script.py 项目： rxblue/ejercicio-biopython

 def test_summarize_contents(self):
   s = script.summarize_contents(os.path.abspath("data/AF323668.gbk"))
   self.assertDictEqual({""})
   print(s)
   s = script.summarize_contents(os.path.abspath("data/ls_orchid.fasta"))
   self.assertDictEqual({""})
   print(s)
   s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
   self.assertDictEqual({""})
   print(s)
   s = script.summarize_contents(os.path.abspath("data/m_cold.fasta"))
   self.assertDictEqual({""})
   print(s)
   s = script.summarize_contents(os.path.abspath("data/NC_002703.gbk"))
   self.assertDictEqual({""})
   print(s)
   s = script.summarize_contents(os.path.abspath("data/opuntia.fasta"))
   self.assertDictEqual({""})
   print(s)

示例#4

显示文件

文件： test_script.py 项目： supernova311/ejercicio-biopython

 def test_summarize_contents(self):
  s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
  self.assertDictEqual({""})

示例#5

显示文件

import us
import script
import unittest
class miPrueba(Unittest.testCase)
  
  def test_summarize_contents(self)
  s = script.summarize_contents(os.path.abspath("data/AF323668.gbk"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/ls_orchid.fasta"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/ls_orchid.gbk"))
  self.assertDictEqual({""})
  
  s = script.summarize_contents(os.path.abspath("data/m_cold.fasta"))
  self.assertDictEqual({""})
                                                
  s = script.summarize_contents(os.path.abspath("data/NC_002709.gbk"))
  self.assertDictEqual({""})
  
  s = script.sumarize_contents(os.path.abspath("data/opuntia.fasta"))
  self.assertDictEqual({""})