def set_ij_env(ij_dir):
"""
Create a list of required jars and add to the java classpath
:param ij_dir: System path for Fiji.app
:return: num_jar(int): number of jars added
"""
jars = []
# search jars directory
jars.extend(search_for_jars(ij_dir, '/jars'))
# search plugins directory
jars.extend(search_for_jars(ij_dir, '/plugins'))
# add to classpath
scyjava_config.add_classpath(os.pathsep.join(jars))
return len(jars)
def _init_jvm_options():
import scyjava_config
PAINTERA_ENDPOINT = 'org.janelia.saalfeldlab:paintera:{}'.format(_paintera_version)
RELEVANT_MAVEN_REPOS = {'scijava.public' : 'https://maven.scijava.org/content/groups/public'}
for _, repo in scyjava_config.get_repositories().items():
if 'scijava.public' in RELEVANT_MAVEN_REPOS and repo == RELEVANT_MAVEN_REPOS['scijava.public']:
del RELEVANT_MAVEN_REPOS['scijava.public']
scyjava_config.add_endpoints(PAINTERA_ENDPOINT, '{}'.format(os.getenv('PAINTERA_SLF4J_BINDING', 'org.slf4j:slf4j-simple:1.7.25')))
scyjava_config.add_repositories(RELEVANT_MAVEN_REPOS)
scyjava_config.add_classpath(_jfx_rt_jar)
return scyjava_config