def main(session, user, container): """Create workflow related projects. Args: session (DBSession): user (User): owner of created project container (ROContainer): top level container Returns: None """ # default interfaces for openalea roa = ROContainer() roa.init(session, dict(owner=user.id, name="openalea.interfaces")) top = ROContainer() top.init(session, dict(owner=user.id, name="openalea", contents=[roa])) itrans = {} for iname in ("IBool", "ICodeStr", "IColor", "IData", "IDateTime", "IDict", "IDirStr", "IEnumStr", "IFileStr", "IFloat", "IFunction", "IImage", "IInt", "IRef", "IRGBColor", "ISequence", "ISlice", "IStr", "ITextStr", "ITuple", "ITuple3"): standard_interface = get_interface_by_name(session, iname[1:].lower()) if standard_interface is not None: ancestors = [standard_interface.id] else: ancestors = [] roi = ROInterface() roi.init(session, dict(owner=user.id, name=iname, ancestors=ancestors)) ROLink.connect(session, roa.id, roi.id, "contains") itrans[iname] = roi.id roc = ROContainer() roc.init(session, dict(owner=user.id, name="nodelib")) ROLink.connect(session, container.id, roc.id, 'contains') ndefs = [] for i in range(3): node_def = dict(name="read%d" % i, description="toto was here", owner=user.id, function="testio:read", inputs=[dict(name="in1", interface=itrans["IInt"], default="0", description="counter"), dict(name="in2", interface=itrans["IStr"], default="a", description="unit")], outputs=[dict(name="ret", interface=itrans["IInt"], description="important result")]) rown = ROWorkflowNode() rown.init(session, node_def) ndefs.append(rown) ROLink.connect(session, roc.id, rown.id, "contains") # alias = ContentItem.create(session, uuid1().hex, "alias", nodelib) # alias.author = "revesansparole" # alias.name = ndefs[2]['id'] workflow_def = dict(name="sample_workflow", description="trying some stuff", owner="revesansparole", nodes=[dict(id=ndefs[0].id, label="node1", x=-50, y=-80), dict(id=ndefs[1].id, label=None, x=50, y=-80), dict(id=ndefs[2].id, label=None, x=0, y=0), dict(id='4094cf5a490711e6aa4cd4bed973e64a', label="fail", x=0, y=80)], links=[dict(source=0, source_port="ret", target=2, target_port="in1"), dict(source=1, source_port="ret", target=2, target_port="in2"), dict(source=2, source_port="ret", target=3, target_port="in")]) row = ROWorkflow() row.init(session, workflow_def) ROLink.connect(session, roc.id, row.id, "contains") roc = ROContainer() roc.init(session, dict(owner=user.id, name="provenance")) ROLink.connect(session, container.id, roc.id, 'contains') with open("seeweb/scripts/gallery/graph_pulse.png", 'rb') as f: graph_pulse = b64encode(f.read()) with open("seeweb/scripts/sphere.json", 'r') as f: sphere = json.load(f) data = [dict(id=uuid1().hex, type="ref", value=itrans["IInt"]), dict(id=uuid1().hex, type="int", value=10), dict(id=uuid1().hex, type="str", value="Killroy was here"), dict(id=uuid1().hex, type="image", value=graph_pulse), dict(id=uuid1().hex, type="scene3d", value=sphere) ] prov_def = dict(name="sample_provenance", description="trying some stuff", owner=user.id, workflow=row.id, time_init=10, time_end=14, data=data, parameters=[dict(node=0, port="in1", data=data[0]['id']), dict(node=0, port="in2", data=data[2]['id']) ], executions=[ dict(node=0, time_init=10, time_end=11, inputs=[ {"port": "in1", "data": data[0]['id']}, {"port": "in2", "data": data[2]['id']} ], outputs=[ {"port": "ret", "data": data[1]['id']} ]), dict(node=1, time_init=10, time_end=11, inputs=[ {"port": "in1", "data": data[0]['id']} ], outputs=[ {"port": "ret", "data": data[3]['id']} ]), dict(node=2, time_init=12, time_end=13, inputs=[ {"port": "in1", "data": data[1]['id']}, {"port": "in2", "data": data[3]['id']} ], outputs=[ {"port": "ret", "data": data[4]['id']} ]) ] ) with open("../prov.wkf", 'w') as f: json.dump(prov_def, f) rop = ROWorkflowProv() rop.init(session, prov_def) ROLink.connect(session, roc.id, rop.id, "contains")
def main(session, user, container): """Create a project that contains different types of data Args: session (DBSession): user (User): owner of created project container (ROContainer): top level container Returns: None """ # register common data interfaces roc = ROContainer() roc.init( session, dict( id="81c69a8558a311e6afb6d4bed973e64a", owner=user.id, name="interfaces", public=True, description="Store commonly used interfaces", ), ) roi = ROInterface() roi.init( session, dict( id=ROData.implements, owner=user.id, name="any", public=True, description="Interface used for data that don't " "have a specific interface", ), ) ROLink.connect(session, roc.id, roi.id, "contains") ropy = ROInterface() ropy.init(session, dict(id="dc5b10c858a611e6afb6d4bed973e64a", owner=user.id, name="pyobj", public=True)) ROLink.connect(session, roc.id, ropy.id, "contains") schema = dict( title="Interface for data of type 'string'", description="Just a simple chain of characters", type="string" ) roi = ROInterface() roi.init( session, dict( id="006bca4c58a311e6afb6d4bed973e64a", owner=user.id, name="string", public=True, schema=cvt_schema(schema), ancestors=[ropy.id], ), ) ROLink.connect(session, roc.id, roi.id, "contains") sid = roi.id for name in ("code", "path", "ref", "text"): roi = ROInterface() roi.init(session, dict(owner=user.id, name=name, public=True, ancestors=[sid])) ROLink.connect(session, roc.id, roi.id, "contains") schema = dict(title="Interface for data of type 'number'", description="Just a simple number", type="number") roi = ROInterface() roi.init( session, dict( id="c7f6a30a58a511e6afb6d4bed973e64a", owner=user.id, name="number", public=True, schema=cvt_schema(schema), ancestors=[ropy.id], ), ) ROLink.connect(session, roc.id, roi.id, "contains") sid = roi.id for name in ("complex", "int", "float"): roi = ROInterface() roi.init(session, dict(owner=user.id, name=name, public=True, ancestors=[sid])) ROLink.connect(session, roc.id, roi.id, "contains") rgba_schema = dict( title="Interface for color of type rgba", description="Just a simple array of rgba quadruplets", type="array", minLength=4, maxLength=4, items=dict(type="int"), ) roi = ROInterface() roi.init( session, dict( id="256203e058b911e6afb6d4bed973e64a", owner=user.id, name="rgba", public=True, schema=cvt_schema(rgba_schema), ancestors=[], ), ) ROLink.connect(session, roc.id, roi.id, "contains") schema = dict( title="Interface for data of type 2D images", description="Just a simple 2d array of rgba quadruplets", type="array", minLength=1, items=dict(type="array", minLength=1, items=rgba_schema), ) roi = ROInterface() roi.init( session, dict(id=ROImage.implements, owner=user.id, name="image", public=True, schema=cvt_schema(schema), ancestors=[]), ) ROLink.connect(session, roc.id, roi.id, "contains") schema = dict( title="Interface for data of type 3D scenes", description="Json description of a 3D scene", type="array", minLength=1, items=dict(type="array", minLength=1, items=rgba_schema), ) roi = ROInterface() roi.init( session, dict( id=ROScene3d.implements, owner=user.id, name="scene3d", public=True, schema=cvt_schema(schema), ancestors=[] ), ) ROLink.connect(session, roc.id, roi.id, "contains") # create a sample project with some common data examples roc = ROContainer() roc.init(session, dict(id="0a73ad11596111e6a3a6d4bed973e64a", owner=user.id, name="data", ctype="project")) ROLink.connect(session, container.id, roc.id, "contains") # raw data rod = ROData() rod.init(session, dict(owner=user.id, name="test number", value=3.14159)) ROLink.connect(session, roc.id, rod.id, "contains") with open("seeweb/ro/data/static/default_avatar.png", "rb") as f: value = b64encode(f.read()) rod = ROData() rod.init(session, dict(owner=user.id, name="test data", value=value)) ROLink.connect(session, roc.id, rod.id, "contains") # image with open("seeweb/ro/data/static/default_avatar.png", "rb") as f: value = b64encode(f.read()) roi = ROImage() roi.init( session, dict( id="03faa88158bb11e6afb6d4bed973e64a", owner=user.id, name="test image", value=value, description="Sample image for testing purpose", ), ) ROLink.connect(session, roc.id, roi.id, "contains") # scene3D with open("seeweb/scripts/scene.json", "r") as f: sc = json.load(f) rosc = ROScene3d() rosc.init(session, dict(owner=user.id, name="test scene", value=sc)) ROLink.connect(session, roc.id, rosc.id, "contains")