def combine(self, path=''):
""" combines SPECFEM3D kernels
"""
unix.cd(self.getpath)
# create temporary files and directories
dirs = unix.ls(path)
with open('kernels_list.txt', 'w') as file:
file.write('\n'.join(dirs) + '\n')
unix.mkdir('INPUT_KERNELS')
unix.mkdir('OUTPUT_SUM')
for dir in dirs:
src = path + '/' + dir
dst = 'INPUT_KERNELS' + '/' + dir
unix.ln(src, dst)
# sum kernels
self.mpirun(PATH.SOLVER_BINARIES + '/' + 'xsum_kernels')
unix.mv('OUTPUT_SUM', path + '/' + 'sum')
# remove temporary files and directories
unix.rm('INPUT_KERNELS')
unix.rm('kernels_list.txt')
unix.cd(path)
def sum_residuals(self, path='', suffix=''):
""" Returns sum of squares of residuals
"""
src = path + '/' + 'residuals'
dst = PATH.OPTIMIZE + '/' + 'f_' + suffix
residuals = []
for file in unix.ls(src):
fromfile = np.loadtxt(src + '/' + file)
residuals.append(fromfile**2.)
np.savetxt(dst, [np.sum(residuals)])
def sum_residuals(self, path='', suffix=''):
""" Returns sum of squares of residuals
"""
src = path +'/'+ 'residuals'
dst = PATH.OPTIMIZE +'/'+ 'f_' + suffix
residuals = []
for file in unix.ls(src):
fromfile = np.loadtxt(src +'/'+ file)
residuals.append(fromfile**2.)
np.savetxt(dst, [np.sum(residuals)])
def sum_residuals(self, path='', suffix=''):
""" Sums residuals to obtain misfit function value
"""
src = path +'/'+ 'residuals'
dst = PATH.OPTIMIZE +'/'+ 'f_' + suffix
residuals = []
for file in unix.ls(src):
fromfile = np.loadtxt(src +'/'+ file)
residuals.append(fromfile**2.)
np.savetxt(dst, [np.sum(residuals)])
def combine(self, path=''):
""" combines SPECFEM3D_GLOBE kernels
"""
dirs = unix.ls(path)
# initialize kernels
unix.cd(path)
for key in self.model_parameters:
if key not in self.inversion_parameters:
for i in range(PAR.NPROC):
proc = '%06d' % i
name = self.kernel_map[key]
src = PATH.GLOBAL + '/' + 'mesh' + '/' + key + '/' + proc
dst = path + '/' + 'sum' + '/' + 'proc' + proc + '_' + name + '.bin'
savebin(np.load(src), dst)
# create temporary files and directories
unix.cd(self.getpath)
with open('kernels_list.txt', 'w') as file:
file.write('\n'.join(dirs) + '\n')
unix.mkdir('INPUT_KERNELS')
unix.mkdir('OUTPUT_SUM')
for dir in dirs:
src = path + '/' + dir
dst = 'INPUT_KERNELS' + '/' + dir
unix.ln(src, dst)
# sum kernels
self.mpirun(PATH.SOLVER_BINARIES + '/' + 'xsum_kernels')
unix.mv('OUTPUT_SUM', path + '/' + 'sum')
# remove temporary files and directories
unix.rm('INPUT_KERNELS')
unix.rm('kernels_list.txt')
unix.cd(path)
def combine(self, path=''):
"""combines SPECFEM2D kernels"""
subprocess.call([self.getpath + '/' + 'bin/xsmooth_sem'] +
[str(len(unix.ls(path)))] + [path])