Python ungap_sequences示例

示例#1

文件： test_transform.py 项目： pansapiens/seqmagick

    def test_dash_gap(self):
        sequences = [SeqRecord(Seq("AAA"), id="s1"),
                SeqRecord(Seq("A-G"), id="s2"),
                SeqRecord(Seq("-A-"), id="s3"),]

        ungapped = list(transform.ungap_sequences(sequences))
        self.assertEqual(["AAA", "AG", "A"], [str(s.seq) for s in ungapped])

示例#2

文件： test_transform.py 项目： yimsea/seqmagick

    def test_dash_gap(self):
        sequences = [SeqRecord(Seq("AAA"), id="s1"),
                SeqRecord(Seq("A-G"), id="s2"),
                SeqRecord(Seq("-A-"), id="s3"),]

        ungapped = list(transform.ungap_sequences(sequences))
        self.assertEqual(["AAA", "AG", "A"], [str(s.seq) for s in ungapped])