def update_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_user_created_object_permissions(locus_list,
request.user,
permission_level=CAN_EDIT)
request_json = json.loads(request.body)
genes_by_id, intervals, invalid_items = parse_locus_list_items(
request_json)
if invalid_items and not request_json.get('ignoreInvalidItems'):
return create_json_response({'invalidLocusListItems': invalid_items},
status=400,
reason=INVALID_ITEMS_ERROR)
update_model_from_json(locus_list, request_json, allow_unknown_keys=True)
if genes_by_id is not None:
_update_locus_list_items(locus_list, genes_by_id, intervals,
request_json)
return create_json_response({
'locusListsByGuid': {
locus_list.guid: get_json_for_locus_list(locus_list, request.user)
},
'genesById': genes_by_id or {},
})
def delete_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_user_created_object_permissions(locus_list,
request.user,
permission_level=CAN_EDIT)
locus_list.delete()
return create_json_response({'locusListsByGuid': {locus_list_guid: None}})
def update_gene_note_handler(request, gene_id, note_guid):
note = GeneNote.objects.get(guid=note_guid)
check_user_created_object_permissions(note, request.user)
request_json = json.loads(request.body)
update_model_from_json(note, request_json, user=request.user, allow_unknown_keys=True)
return create_json_response({'genesById': {gene_id: {
'notes': _get_gene_notes(gene_id, request.user)
}}})
def _delete_project(project_guid, user):
"""Delete project.
Args:
project_guid (string): GUID of the project to delete
user (object): Django ORM model for the user
"""
project = Project.objects.get(guid=project_guid)
check_user_created_object_permissions(project, user)
IgvSample.bulk_delete(user, individual__family__project=project)
Sample.bulk_delete(user, individual__family__project=project)
Individual.bulk_delete(user, family__project=project)
Family.bulk_delete(user, project=project)
project.delete_model(user, user_can_delete=True)