def test_chr_start_sequences(self):
exclude = ('MT', '17' , 'chr6_cox_hap2', 'chr6_apd_hap1', 'chr6_ssto_hap7',
'chr6_mcf_hap5', 'chr6_qbl_hap6', 'chr6_mann_hap4', 'chr6_dbb_hap3',
'chr17_ctg5_hap1', 'chr4_ctg9_hap1', 'RSRS')
test_str = "N" * 20
for name in BUILD37_ACCESSIONS.keys():
# these chromosomes do not have telomeres
if name in exclude:
continue
seq = Chromosome(name).sequence(0, 20)
self.assertEqual(seq, test_str, name)
def test_file_names(self):
for accession in BUILD37_ACCESSIONS.values():
fasta = os.path.join(get_data_directory(), str(accession) + ".fa")
self.assertTrue(os.path.isfile(fasta), fasta)