def test_default(self):
filter_iter = seqfilter.length_filter(self.seqs)
self.assertIsInstance(filter_iter, types.GeneratorType)
filtrate = list(filter_iter)
self.assertEqual(len(filtrate), len(self.seqs))
self.assertEqual(self.seqs, filtrate)
def test_no_filtrate(self):
filtrate = list(seqfilter.length_filter(self.seqs, 9, 10))
self.assertEqual([], filtrate)
filtrate = list(seqfilter.length_filter(self.seqs, 0, 3))
self.assertEqual([], filtrate)
def test_limit_error(self):
f = seqfilter.length_filter([], 6, 5)
self.assertRaises(ValueError, f.next)
def test_equal_min_max(self):
filtrate = list(seqfilter.length_filter(self.seqs, 6, 6))
self.assertEqual(len(filtrate), 1)
self.assertTrue(filtrate[0] is self.seqs[2])
def test_empty_iter(self):
filtrate = list(seqfilter.length_filter([]))
self.assertEqual([], filtrate)
def test_no_max(self):
for i in range(4, 9):
filtrate = list(seqfilter.length_filter(self.seqs, i))
self.assertEqual(len(filtrate), 9-i)
def test_no_min(self):
for i in range(4, 9):
filtrate = list(seqfilter.length_filter(self.seqs, max_length=i))
self.assertEqual(len(filtrate), i-3)
def test_no_filtrate(self):
filtrate = list(seqfilter.length_filter(self.seqs, 9, 10))
self.assertEqual([], filtrate)
filtrate = list(seqfilter.length_filter(self.seqs, 0, 3))
self.assertEqual([], filtrate)
def test_no_filter_limit(self):
filtrate = list(seqfilter.length_filter(self.seqs, 4, 8))
self.assertEqual(len(filtrate), len(self.seqs))
self.assertEqual(self.seqs, filtrate)
def test_equal_min_max(self):
filtrate = list(seqfilter.length_filter(self.seqs, 6, 6))
self.assertEqual(len(filtrate), 1)
self.assertTrue(filtrate[0] is self.seqs[2])
def test_empty_iter(self):
filtrate = list(seqfilter.length_filter([]))
self.assertEqual([], filtrate)
def test_no_min(self):
for i in range(4, 9):
filtrate = list(seqfilter.length_filter(self.seqs, max_length=i))
self.assertEqual(len(filtrate), i - 3)
def test_no_max(self):
for i in range(4, 9):
filtrate = list(seqfilter.length_filter(self.seqs, i))
self.assertEqual(len(filtrate), 9 - i)
def test_no_filter_limit(self):
filtrate = list(seqfilter.length_filter(self.seqs, 4, 8))
self.assertEqual(len(filtrate), len(self.seqs))
self.assertEqual(self.seqs, filtrate)
def test_default(self):
filter_iter = seqfilter.length_filter(self.seqs)
self.assertIsInstance(filter_iter, types.GeneratorType)
filtrate = list(filter_iter)
self.assertEqual(len(filtrate), len(self.seqs))
self.assertEqual(self.seqs, filtrate)
def test_limit_error(self):
f = seqfilter.length_filter([], 6, 5)
self.assertRaises(ValueError, f.next)