def add_images_section(self):
style = "width:65%"
import pylab
pylab.ioff()
def plotter1(filename):
self.bam.plot_bar_flags(logy=True, filename=filename)
html1 = self.create_embedded_png(plotter1, "filename", style=style)
def plotter2(filename):
self.bam.plot_bar_flags(logy=False, filename=filename)
html2 = self.create_embedded_png(plotter2, "filename", style=style)
def plotter3(filename):
self.bam.plot_bar_mapq(filename=filename)
html3 = self.create_embedded_png(plotter3, "filename", style=style)
self.sections.append({
"name": "Image",
"anchor": "table",
"content": html1 + html2 + html3
})
def plotter(filename, key):
name = key.replace(" ", "_")
pylab.ioff()
histograms[key].plot(logy=False, lw=2, marker="o")
pylab.title(name + "(%s)" % count)
pylab.grid(True)
pylab.savefig(filename)
pylab.close() # need to close the figure otherwise warnings
def plotter(filename, key):
name = key.replace(" ", "_")
pylab.ioff()
histograms[key].plot(logy=False, lw=2, marker="o")
pylab.title(name + "(%s)" % count)
pylab.grid(True)
pylab.savefig(filename)
pylab.close() # need to close the figure otherwise warnings
def add_images_section(self):
style = "width:65%"
import pylab
pylab.ioff()
def plotter1(filename):
self.bam.plot_bar_flags(logy=True, filename=filename)
html1 = self.create_embedded_png(plotter1, "filename", style=style)
def plotter2(filename):
self.bam.plot_bar_flags(logy=False, filename=filename)
html2 = self.create_embedded_png(plotter2, "filename", style=style)
def plotter3(filename):
self.bam.plot_bar_mapq(filename=filename)
html3 = self.create_embedded_png(plotter3, "filename", style=style)
self.sections.append({
"name": "Image",
"anchor": "table",
"content": html1 + html2 + html3
})
def add_images_section(self):
style = "width:65%"
import pylab
pylab.ioff()
def plotter1(filename):
pylab.clf()
self.trf.hist_entropy()
pylab.savefig(filename)
html1 = self.create_embedded_png(plotter1, "filename", style=style)
def plotter2(filename):
pylab.clf()
self.trf.hist_period_size()
pylab.savefig(filename)
html2 = self.create_embedded_png(plotter2, "filename", style=style)
self.sections.append({
"name": "Image",
"anchor": "table",
"content": html1 + html2
})