def setUp(self):
self.path = "/humgen/projects/serapis_staging/test-baton/test-collection-acls"
BatonCollectionAPI.remove_all_acls(self.path)
self.acl = ACL(user='******', zone='humgen', permission='READ')
BatonCollectionAPI.add_or_replace_acl(self.path, self.acl)
existing_acls = BatonCollectionAPI.get_acls(self.path)
self.assertEqual(len(existing_acls), 1)
def test_add_or_replace_a_list_of_acls(self):
self.acls = [
ACL(user='******', zone='humgen', permission='READ'),
ACL(user='******', zone='humgen', permission='READ')
]
BatonCollectionAPI.add_or_replace_a_list_of_acls(self.path, self.acls)
self.acls_set = BatonCollectionAPI.get_acls(self.path)
self.assertEqual(len(self.acls_set), 2)
def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test-collection-acls"
self.acls = [
ACL(user='******', zone='humgen', permission='READ'),
ACL(user='******', zone='humgen', permission='READ')
]
BatonCollectionAPI.add_or_replace_a_list_of_acls(self.fpath, self.acls)
self.acls_set = BatonCollectionAPI.get_acls(self.fpath)
self.assertNotEqual(len(self.acls_set), 0)
def test_get_or_replace_acls_when_adding_a_new_acl(self):
added_acl = ACL(user='******', zone='humgen', permission='OWN')
BatonCollectionAPI.add_or_replace_acl(self.path, added_acl)
acls_set = BatonCollectionAPI.get_acls(self.path)
found = False
for acl in acls_set:
if acl == added_acl:
found = True
self.assertTrue(found)
def setUp(self):
self.parent_coll = "/humgen/projects/serapis_staging/test-icmds/test-mk-rm-coll"
self.coll_created = "/humgen/projects/serapis_staging/test-icmds/test-mk-rm-coll/new_coll"
files = BatonCollectionAPI.list_collections(self.parent_coll)
print("Files: %s" % files)
self.assertFalse(self.coll_created in files)
def setUp(self):
self.coll = "/humgen/projects/serapis_staging/test-icmds/test-imv"
self.fpath = "/humgen/projects/serapis_staging/test-icmds/test-imv/original_name.txt"
self.renamed_fpath = "/humgen/projects/serapis_staging/test-icmds/test-imv/renamed.txt"
files = BatonCollectionAPI.list_data_objects(self.coll)
self.assertEqual(len(files), 1)
self.assertTrue(self.fpath in files)
def test_get_acls_collection(self):
# TODO: modify the test so that it removes everything, and then adds the ACls before checking on their existence
result = BatonCollectionAPI._get_acls(self.path)
expected = {
ACL(user='******', zone='humgen', permission='OWN'),
ACL(user='******', zone='Sanger1', permission='READ'),
}
self.assertSetEqual(result, expected)
def test_get_or_replace_acls_when_replacing_an_acl(self):
added_acl = ACL(user='******', zone='humgen', permission='OWN')
BatonCollectionAPI.add_or_replace_acl(self.path, added_acl)
acls_set = BatonCollectionAPI.get_acls(self.path)
self.assertSetEqual(acls_set, {added_acl})
replacement_acl = ACL(user='******', zone='humgen', permission='READ')
BatonCollectionAPI.add_or_replace_acl(self.path, replacement_acl)
acls_set = BatonCollectionAPI.get_acls(self.path)
self.assertSetEqual(acls_set, {replacement_acl})
def tearDown(self):
ICmdsCollectionAPI.remove(self.coll_created)
contents = BatonCollectionAPI.list_collections(self.parent_coll)
self.assertFalse(self.coll_created in contents)
def test_rm_metadata(self):
BatonCollectionAPI.remove_metadata(self.coll_path, self.meta_dict)
new_meta = BatonCollectionAPI.get_all_metadata(self.coll_path).to_dict()
self.assertFalse('key1' in new_meta)
def setUp(self):
self.path = "/humgen/projects/serapis_staging/test-baton/test-collection-acls"
BatonCollectionAPI.remove_all_acls(self.path)
def tearDown(self):
BatonCollectionAPI.remove_metadata(self.coll_path, self.meta_dict)
def test_copy(self):
ICmdsDataObjectAPI.copy(self.orig_fpath, self.copy_fpath)
files = BatonCollectionAPI.list_data_objects(self.coll)
self.assertEqual(len(files), 2)
def test_upload(self):
ICmdsDataObjectAPI.upload(self.src_path, self.dest_path)
files = BatonCollectionAPI.list_data_objects(self.dest_coll)
self.assertTrue(self.dest_path in files)
def setUp(self):
self.path = "/humgen/projects/serapis_staging/test-baton/test-collection-acls"
BatonCollectionAPI.remove_all_acls(self.path)
BatonCollectionAPI.add_or_replace_a_list_of_acls(self.path,
[ACL(user='******', zone='humgen', permission='OWN'),
ACL(user='******', zone='Sanger1', permission='READ')])
def test_list_contents(self):
contents = BatonCollectionAPI.list_data_objects(self.coll_path)
self.assertEqual(len(contents), 1)
self.assertEqual(contents[0], "/humgen/projects/serapis_staging/test-baton/test_coll_metadata/test_list_coll.txt")
def tearDown(self):
BatonCollectionAPI.remove_metadata(self.coll_path, {'key1': {'val2'}})
def test_update_metadata(self):
BatonCollectionAPI.update_metadata(self.coll_path, 'key1', {'val2'})
crt_meta = BatonCollectionAPI.get_all_metadata(self.coll_path).to_dict()
self.assertTrue('key1' in crt_meta)
self.assertSetEqual(crt_meta['key1'], {'val2'})
def setUp(self):
self.coll_path = "/humgen/projects/serapis_staging/test-baton/test_coll_metadata"
self.meta_dict = {'key1': {'val1'}}
BatonCollectionAPI.add_metadata(self.coll_path, self.meta_dict)
crt_meta = BatonCollectionAPI.get_all_metadata(self.coll_path).to_dict()
self.assertTrue('key1' in crt_meta)
def setUp(self):
self.coll = "/humgen/projects/serapis_staging/test-icmds/test-icp/"
self.orig_fpath = "/humgen/projects/serapis_staging/test-icmds/test-icp/original.txt"
self.copy_fpath = "/humgen/projects/serapis_staging/test-icmds/test-icp/copy.txt"
files = BatonCollectionAPI.list_data_objects(self.coll)
self.assertEqual(1, len(files))
def test_remove_all_acls(self):
BatonCollectionAPI.remove_all_acls(self.fpath)
acls_set = BatonCollectionAPI.get_acls(self.fpath)
self.assertEqual(set(), acls_set)
def tearDown(self):
ICmdsDataObjectAPI.remove(self.copy_fpath)
files = BatonCollectionAPI.list_data_objects(self.coll)
self.assertEqual(len(files), 1)
def test_remove_acls_for_a_list_of_users(self):
BatonCollectionAPI.remove_acls_for_a_list_of_users(self.path, [(self.acl.user, self.acl.zone)])
existing_acls = BatonCollectionAPI.get_acls(self.path)
self.assertEqual(0, len(existing_acls))
def test_move(self):
ICmdsDataObjectAPI.move(self.fpath, self.renamed_fpath)
files = BatonCollectionAPI.list_data_objects(self.coll)
self.assertTrue(self.renamed_fpath in files)
self.assertEqual(len(files), 1)
def tearDown(self):
BatonCollectionAPI.remove_all_acls(self.path)
def test_create(self):
ICmdsCollectionAPI.create(self.coll_created)
contents = BatonCollectionAPI.list_collections(self.parent_coll)
print("Contents: %s" % contents)
self.assertTrue(self.coll_created in contents)
def test_add_metadata(self):
BatonCollectionAPI.add_metadata(self.coll_path, self.meta_dict)
crt_meta_dict = BatonCollectionAPI.get_all_metadata(self.coll_path).to_dict()
self.assertTrue('key1' in crt_meta_dict)