def remove_study(self,study_id, branch, author="OpenTree API <*****@*****.**>"):
"""Remove a study
Given a study_id, branch and optionally an
author, remove a study on the given branch
and attribute the commit to author.
Returns the SHA of the commit on branch.
"""
os.chdir(self.repo)
study_dir = "study/%s" % study_id
study_filename = "%s/%s.json" % (study_dir, study_id)
if self.branch_exists(branch):
git.checkout(branch)
if not os.path.isdir(study_dir):
# branch already exists locally with study removed
# so just return the commit SHA
return git("rev-parse","HEAD").strip()
else:
# Create this new branch off of master, NOT the currently-checked out branch!
git.checkout("master")
git.checkout("-b",branch)
git.rm("-rf", study_dir)
git.commit(author=author, message="Delete Study #%s via OpenTree API" % study_id)
new_sha = git("rev-parse","HEAD")
return new_sha.strip()
def rm(name, **kwargs):
"""Remove a note by name."""
try:
git.rm(name)
except ErrorReturnCode_128:
raise FileNotFoundError
git.commit("-m", "rm {}".format(name))
def mv(self, sender, page, old_path, author, message, commit=True):
status = git.status("--porcelain", old_path).stdout.decode("utf8")[1:2]
extra_path = ""
if status in ("D", "M"):
git.rm(old_path)
extra_path = old_path
if commit:
self.commit(page, author=author, message=message, extra_path=extra_path)
def mv(self, sender, page, old_path, author, message, commit=True):
status = git.status('--porcelain', old_path).stdout.decode('utf8')[1:2]
extra_path = ''
if status in ('D', 'M'):
git.rm(old_path)
extra_path = old_path
if commit:
self.commit(page, author=author, message=message, extra_path=extra_path)
def mv(self, sender, page, old_path, author, message, commit=True):
status = git.status('--porcelain', old_path).stdout.decode('utf8')[1:2]
extra_path = ''
if status in ('D', 'M'):
git.rm(old_path)
extra_path = old_path
if commit:
self.commit(page, author=author, message=message, extra_path=extra_path)
def pagesBranch():
try:
git.checkout("--orphan", "gh-pages")
git.rm("-r", "-f", "--ignore-unmatch", ".")
except: print("No files exist in the gh-pages branch")
try: sh.cp("-R", os.path.dirname(os.path.realpath(__file__)) + "/www/coming-soon/*", "./")
except: print("Template not found")
pushAll("Creating the first instance of the coming-soon site")
try: git.checkout("dev")
except: git.checkout("-b", "dev")
def remove_study(self,
study_id,
branch,
author="OpenTree API <*****@*****.**>"):
"""Remove a study
Given a study_id, branch and optionally an
author, remove a study on the given branch
and attribute the commit to author.
Returns the SHA of the commit on branch.
"""
os.chdir(self.repo)
study_dir = "study/%s" % study_id
study_filename = "%s/%s.json" % (study_dir, study_id)
if self.branch_exists(branch):
git.checkout(branch)
if not os.path.isdir(study_dir):
# branch already exists locally with study removed
# so just return the commit SHA
return git("rev-parse", "HEAD").strip()
else:
# Create this new branch off of master, NOT the currently-checked out branch!
git.checkout("master")
git.checkout("-b", branch)
git.rm("-rf", study_dir)
git.commit(author=author,
message="Delete Study #%s via OpenTree API" % study_id)
new_sha = git("rev-parse", "HEAD")
return new_sha.strip()
def test_remote_delete_a_page(self):
git.rm(self.page.path)
git.commit('-m', 'delete page')
response = self.client.post(self.url, {})
self.assertEqual(Page.objects.count(), 0)
def install_app(self, appid, pdpobject):
print "Analyzing artifacts.."
plan = pdpobject.plan
for a in plan.artifacts:
h, c = self.handler_map.get(a.type)
if h is None:
raise NotImplementedError("No handler for artifact type : %s" % a.type)
print "Detected app type : %s, Matching cartridge : %s" % (a.type, c)
ho = h(pdpobject, a)
renv = ho.handle_artifact()
print "Creating application.."
r = self._create_app(appid, h.cartridge)
if r.ok:
print "Application %s created" % appid
else:
print "Error creating application %s" % appid
print r.status_code, r.text
return
# Set env variables on the app using rhc for now
from sh import rhc
for k, v in renv.items():
rhc.env.set("%s=%s" % (k, v), "-a", appid)
print "Set environment %s=%s on the app" % (k, v)
resp = r.json()
print "Received response : %s" % resp
data = resp["data"]
# Start staging it.
git_url = data["git_url"]
web_url = data["app_url"]
print "Staging PDP archive.."
print "PDP archive is at : %s" % pdpobject.pdpdir
print "Configuring git.."
# Empty out any samples given by the cartridge
from sh import git
import sh
import tempfile
import shutil
import subprocess
tmpdir = tempfile.mkdtemp()
subprocess.check_call(["git", "clone", git_url, tmpdir])
print "Cloned cartridge sample to %s" % tmpdir
cwd = os.getcwd()
os.chdir(tmpdir)
git.rm("-r", "*")
print "Removed all contents from cartridge repo"
# Copy pdpdir contents
subprocess.check_call("cp -rp %s/* ." % pdpobject.pdpdir, shell=True)
print "Copied app contents to %s" % tmpdir
sh.ls("-la", tmpdir)
print "Adding and committing app code"
git.add("*")
git.commit("-m", "Adding app contents")
print "Configuring git remote.."
git.remote.add("rhc", git_url)
print "Pushing to openshift"
git.push("-u", "-f", "rhc", "master")
print "Uploaded app successfully.."
print "App is available at : %s" % web_url
return appid, git_url, web_url
def test_remote_delete_a_page(self):
git.rm(self.page.path)
git.commit('-m', 'delete page')
response = self.client.post(self.url, {})
self.assertEqual(Page.objects.count(), 0)
"stm32",
"esp32",
"cc3200",
"teensy",
"windows",
"zephyr",
"minimal",
"esp8266",
"pic16bit",
"qemu-arm",
"bare-arm",
"rp2",
]
for p in ports_to_delete:
try:
git.rm("-rf", "ports/" + p)
except sh.ErrorReturnCode_128:
pass
# We inherit stm32 changes into stm because we did a git rename.
git.status("--porcelain=1", "ports/stm", _out=out_buf)
out_buf.seek(0)
line = out_buf.readline()
while line:
state, path = line.split()
if state == "UU":
git.checkout("--ours", path)
git.add(path)
elif state == "UA":
git.rm(path)
line = out_buf.readline()
def mv(self, page, old_path, author, message):
status = git.status('--porcelain', old_path).stdout.decode('utf8')[1:2]
if status == 'D':
git.rm(old_path)
self.commit(page, author=author, message=message)
def mv(self, page, old_path, author, message):
status = git.status('--porcelain', old_path).stdout.decode('utf8')[1:2]
if status == 'D':
git.rm(old_path)
self.commit(page, author=author, message=message)
def migrate_to_git():
if arguments['--users-file']:
users = json.loads(open(arguments['<users_file>']).read())
else:
users = parse_users()
git_repo = arguments['<git_repo>']
if not os.path.exists(git_repo):
os.makedirs(git_repo)
if not os.path.exists(os.path.join(git_repo, '.git')):
git.init(git_repo)
data_dir = os.path.abspath(arguments['<data_dir>'])
root = os.path.join(data_dir, 'pages')
pages = os.listdir(root)
os.chdir(git_repo)
for page in pages:
if page in CONVERSION_BLACKLIST:
continue
versions = get_versions(page, users=users, data_dir=data_dir)
if not versions:
print("### ignoring %s (no revisions found)" % page)
continue
path = _hyphenize(_unquote(page)) + '.txt'
print("### Creating %s\n" % path)
dirname, basename = os.path.split(path)
if dirname and not os.path.exists(dirname):
os.makedirs(dirname)
for version in versions:
revision = version.pop('revision')
# Handle attachment revisions
if revision == '99999999':
continue
print("revision %s" % revision)
try:
if version['content']:
with open(path, 'w') as f:
print("Opening %s" % path)
f.write(version.pop('content'))
print("Adding %s" % path)
git.add(path)
else:
print("Removing %s" % path)
git.rm(path)
version.pop('content')
if version['rst_content']:
with open(path.replace('txt', 'rst'), 'w') as f:
print("Opening %s" % path.replace('txt', 'rst'))
f.write(version.pop('rst_content'))
pandoc(path.replace('txt', 'rst'),
f="rst",
t="markdown_github",
o=path.replace('txt', 'md'))
print("Adding %s" % path.replace('txt', 'rst'))
git.add(path.replace('txt', 'rst'))
print("Adding %s" % path.replace('txt', 'md'))
git.add(path.replace('txt', 'md'))
elif os.path.isfile(path.replace('txt', 'rst')):
print("Removing %s" % path.replace('txt', 'rst'))
git.rm(path.replace('txt', 'rst'))
print("Removing %s" % path.replace('txt', 'md'))
git.rm(path.replace('txt', 'md'))
version.pop('rst_content')
else:
version.pop('rst_content')
print("Committing %s" % path)
print(version['m'])
if not version['m'].strip():
version['m'] = "Change made on %s" % version[
'date'].strftime('%x')
git.commit(path.replace('txt', '*'), **version)
except Exception as e:
print(e)
def main ():
params = get_parameters()
setup_logging(params.verbose)
if (not params.dbuser or not params.dbpw):
logging.error(u'Error: incomplete database login credentials')
sys.exit(-1)
# connect via API to retrieve namespaces
logging.info('Connecting to wiki %s://%s%s/ as %s via API',
params.protocol, params.wikiserver,
params.scriptpath, params.wikiuser)
session = requests.Session()
session.verify = params.certificate
session.auth = None
session.headers['User-Agent'] = 'MwClient/' + mwclient.client.__ver__ + ' (https://github.com/mwclient/mwclient)'
site = mwclient.Site((params.protocol,params.wikiserver),path=params.scriptpath+'/',pool=session)
site.login(params.wikiuser,params.wikipw)
result = site.api('query',meta='siteinfo',siprop='namespaces')
namespaces = {}
try:
for nsid, nsdict in result['query']['namespaces'].iteritems():
if nsid==u'0':
namespaces[nsid] = 'default'
else:
namespaces[nsid] = nsdict['canonical']
except:
logging.error(u'Error in api result: %s',pprint.pformat(result))
# connect via database to retrieve page/revision content
con = MySQLdb.connect(unix_socket=params.socket,
user=params.dbuser,
passwd=params.dbpw,
db=params.dbname,
charset='utf8',
use_unicode=True)
cursor = con.cursor()
returncode = 0
# pages in these namespaces are used to generate the RDF
rdfnamespaces = set(['Metaphor',
'Frame',
'Metaphor_family',
'Frame_family',
'MetaRC',
'CxnMP'])
if params.new:
# populate a new git repository; returncode = 1 signals that RDF should be regenerated
returncode = 1
# query written so as not to return revisions in which the wiki text has not
# changed at all
revq = """\
(SELECT r.rev_id as 'rev_id', p.page_namespace, p.page_title, t.old_text, r.rev_comment,
r.rev_timestamp, u.user_name, u.user_email, 'revision'
FROM revision AS r INNER JOIN page AS p ON r.rev_page = p.page_id
INNER JOIN text AS t ON r.rev_text_id = t.old_id
INNER JOIN user AS u ON r.rev_user=u.user_id
LEFT JOIN revision AS oldr ON r.rev_parent_id = oldr.rev_id
WHERE r.rev_parent_id=0 OR
(t.old_text <> (SELECT t2.old_text
FROM revision AS r2
INNER JOIN text AS t2 ON r2.rev_text_id=t2.old_id
WHERE r2.rev_id=r.rev_parent_id)))
UNION ALL
(SELECT a.ar_rev_id as 'rev_id', a.ar_namespace, a.ar_title, t.old_text, a.ar_comment,
a.ar_timestamp, u.user_name, u.user_email, 'archive'
FROM archive AS a INNER JOIN text AS t ON a.ar_text_id = t.old_id
INNER JOIN user AS u ON a.ar_user=u.user_id
LEFT JOIN archive AS olda ON a.ar_parent_id = olda.ar_rev_id
WHERE a.ar_parent_id=0 OR
(t.old_text <> (SELECT t2.old_text
FROM archive AS a2
INNER JOIN text AS t2 ON a2.ar_text_id=t2.old_id
WHERE a2.ar_rev_id=a.ar_parent_id)))
ORDER BY rev_id ASC"""
# retrieve deletion log events
deltimequery = """\
SELECT l.log_timestamp, u.user_name, u.user_email, l.log_comment, l.log_action
FROM logging AS l, user AS u
WHERE log_type = "delete" AND log_namespace=%s AND log_title=%s
AND l.log_user=u.user_id
ORDER BY log_timestamp DESC"""
deletionfiles = set()
deletionqueue = []
deletiontimes = []
cursor.execute(revq)
for row in cursor:
rev = dict(zip(('id','nsid','title','text','comment',
'tstamp','username','email','type'), row))
rev['ns'] = namespaces[str(rev['nsid'])].replace(u' ',u'_')
rev = processrevision(rev)
# check if a deletion should be executed
while deletiontimes and (rev['datetime'] > deletiontimes[0]):
delitem = deletionqueue.pop(0)
deldatetime = deletiontimes.pop(0)
logging.info(u'running deletion on %s',delitem['pfpath'])
git.rm(delitem['pfpath'])
git.commit(delitem['pfpath'],
author=delitem['author'],
date=delitem['authordate'],
m=delitem['comment'])
addgitcommit(rev)
if (rev['type']=='archive'):
if rev['pfpath'] not in deletionfiles:
# look up a deletion log event
cursor.execute(deltimequery, (int(rev['nsid']),rev['title']))
(deltstamp, username, email, comment, action) = cursor.fetchone()
if action=='delete':
deldatetime = datetime.strptime(deltstamp,'%Y%m%d%H%M%S')
author = username+u' <'+email+u'>'
authordate = deldatetime.isoformat() + 'Z'
delcomment = comment.decode('utf-8')
del_idx = bisect(deletiontimes,deldatetime)
deletiontimes.insert(del_idx, deldatetime)
deletionqueue.insert(del_idx, {'datetime':deldatetime,
'author':author,
'authordate':authordate,
'comment':delcomment,
'pfpath':rev['pfpath']})
deletionfiles.add(rev['pfpath'])
# process outstanding deletions
while deletiontimes:
delitem = deletionqueue.pop(0)
deldatetime = deletiontimes.pop(0)
git.rm(delitem['pfpath'])
git.commit(delitem['pfpath'],
author=delitem['author'],
date=delitem['authordate'],
m=delitem['comment'])
else:
tstampstr = check_output(['git','log','-n','1','--format=%at']).strip()
logging.info('Time stamp is %s', tstampstr)
dtime = datetime.utcfromtimestamp(int(tstampstr))
logging.info('Repository last log entry time: %s', dtime.isoformat()+'Z')
dtime += timedelta(seconds=1)
logging.info('Searching for log entries from time: %s',dtime.strftime('%Y%m%d%H%M%S'))
# update the existing repository using the recentchanges API
result = site.api('query',list='recentchanges',rcdir='newer',
rcstart=dtime.strftime('%Y%m%d%H%M%S'),
rcprop='loginfo|ids|userid|comment|title|timestamp')
recentchanges = result['query']['recentchanges']
while 'query-continue' in result:
continueval = result['query-continue']['recentchanges']['rccontinue']
result = site.api('query',list='recentchanges',rcdir='newer',
rcstart=dtime.strftime('%Y%m%d%H%M%S'),
rcprop='loginfo|ids|userid|comment|title|timestamp',
rccontinue=continueval)
recentchanges.extend(result['query']['recentchanges'])
revq = """\
SELECT r.rev_id, p.page_namespace, p.page_title, t.old_text, r.rev_comment,
r.rev_timestamp, u.user_name, u.user_email, 'revision'
FROM revision AS r INNER JOIN page AS p ON r.rev_page = p.page_id
INNER JOIN text AS t ON r.rev_text_id = t.old_id
INNER JOIN user AS u ON r.rev_user=u.user_id
WHERE r.rev_id=%s"""
userq = """\
SELECT u.user_name, u.user_email FROM user as u WHERE u.user_id=%s
"""
pageq = """\
SELECT r.rev_id, p.page_namespace, p.page_title, t.old_text, r.rev_comment,
r.rev_timestamp, u.user_name, u.user_email, 'revision'
FROM revision AS r INNER JOIN page AS p ON r.rev_id = p.page_latest
INNER JOIN text AS t ON r.rev_text_id = t.old_id
INNER JOIN user AS u ON r.rev_user=u.user_id
WHERE p.page_id=%s"""
for rc in recentchanges:
logging.info(u'processing change: %s', pprint.pformat(rc))
if rc['type'] in ('new','edit'):
cursor.execute(revq,(int(rc['revid']),))
row = cursor.fetchone()
rev = dict(zip(('id','nsid','title','text','comment',
'tstamp','username','email','type'), row))
rev['ns'] = namespaces[str(rev['nsid'])].replace(u' ',u'_')
if rev['ns'] in rdfnamespaces:
returncode = 1
rev = processrevision(rev)
addgitcommit(rev)
elif rc['type'] == 'log':
ns = namespaces[str(rc['ns'])].replace(u' ',u'_')
pfname = rc['title'].replace(u'/',u'___')
pfpath = ns + u'/' + pfname
revdatetime = datetime.strptime(rc['timestamp'],'%Y-%m-%dT%H:%M:%SZ')
authordate = revdatetime.isoformat() + 'Z'
cursor.execute(userq,(int(rc['userid']),))
(user_name, user_email) = cursor.fetchone()
author = user_name + u' <' + user_email +u'>'
gitcomment = rc['comment'].decode('utf-8')
# these events can be delete, restore, or move
if rc['logaction'] in ['move','delete','restore']:
if ns in rdfnamespaces:
returncode = 1
if rc['logaction'] == 'move':
if os.path.exists(pfpath):
newns = namespaces[str(rc['move']['new_ns'])].replace(u' ',u'_')
if newns in rdfnamespaces:
returncode = 1
newpfname = rc['move']['new_title'].replace(u'/',u'___')
newpfpath = newns + u'/' + newpfname
git.mv(pfpath, newpfpath)
mtime = calendar.timegm(time.strptime(authordate, '%Y-%m-%dT%H:%M:%SZ'))
os.utime(newpfpath,(time.time(),mtime))
if not gitcomment:
gitcomment = u'%s renamed to %s' % (pfname, newpfname)
git.commit(newpfpath,author=author,date=authordate,m=gitcomment)
elif rc['logaction'] == 'delete':
if os.path.exists(pfpath):
git.rm(pfpath)
if not gitcomment:
gitcomment = u'%s deleted' % (pfname)
git.commit(newpfpath,author=author,date=authordate,m=gitcomment)
elif rc['logaction'] == 'restore':
cursor.execute(pageq,(int(rc['pageid']),))
row = cursor.fetchone()
rev = dict(zip(('id','nsid','title','text','comment',
'tstamp','username','email','type'), row))
rev['ns'] = namespaces[str(rev['nsid'])].replace(u' ',u'_')
if rev['ns'] in rdfnamespaces:
returncode = 1
rev = processrevision(rev)
rev['gitcomment'] = gitcomment
rev['author'] = author
rev['authordate'] = authordate
addgitcommit(rev)
return returncode
existing_submodules = GetExistingSubmodules()
repos_submodules = [repo['name'] for repo in repos]
submodules_to_add = \
[s for s in repos_submodules if s not in existing_submodules]
submodules_to_remove = \
[s for s in existing_submodules if s not in repos_submodules]
print "To add: ", submodules_to_add
print "To remove: ", submodules_to_remove
for s in submodules_to_remove:
print 'Removing ' + s + '...'
git.submodule.deinit('--force', s)
git.rm(s)
for repo in repos:
if repo['name'] not in submodules_to_add:
continue
print 'Adding ' + repo['full_name'] + '...'
print repo['clone_url']
print repo['name']
git.submodule.add('--force', repo['clone_url'], repo['name'])
print 'Updating ' + repo['full_name'] + '...'
git.submodule.update('--recursive', '--init')
existing_submodules = GetExistingSubmodules()
print 'Fetching remotes...'
git.submodule.foreach('git', 'fetch', '--tags')