dirs.pop(0)
num_dir = len(dirs)
if not os.path.exists(save_path):
os.makedirs(save_path)
f_full = open("%s/%s_data_full.txt" % (save_path, name), 'w+')
f_data = open("%s/%s_data.txt" % (save_path, name), 'w+')
f_log = open("%s/%s_data_log.txt" % (save_path, name), 'w+')
f_ctrl = open("%s/%s_data_ctrl.txt" % (save_path, name), 'w+')
f_nuclear = open("%s/%s_data_nuclear.txt" % (save_path, name), 'w+')
f_nucleoli = open("%s/%s_data_nucleoli.txt" % (save_path, name), 'w+')
for s in range(len(dirs)):
data_path = dirs[s]
f1_full = open("%s/data_full.txt" % data_path, 'r')
dat.append_data(f_full, f1_full, s)
f1_full.close()
f1_data = open("%s/data.txt" % data_path, 'r')
dat.append_data(f_data, f1_data, s)
f1_data.close()
f1_log = open("%s/data_log.txt" % data_path, 'r')
dat.append_data(f_log, f1_log, s)
f1_log.close()
f1_ctrl = open("%s/data_ctrl.txt" % data_path, 'r')
dat.append_data(f_ctrl, f1_ctrl, s)
f1_ctrl.close()
f1_nuclear = open("%s/data_nuclear.txt" % data_path, 'r')
dat.append_data(f_nuclear, f1_nuclear, s)
f1_nuclear.close()
f1_nucleoli = open("%s/data_nucleoli.txt" % data_path, 'r')
dat.append_data(f_nucleoli, f1_nucleoli, s)
f_full = open("%s/%s_data_full.txt" % (save_path, name), 'w+')
f_log = open("%s/%s_data_log.txt" % (save_path, name), 'w+')
f_ctrl = open("%s/%s_data_ctrl.txt" % (save_path, name), 'w+')
if analyze_organelle == 'nucleoli':
f_nuclear = open("%s/%s_data_nuclear.txt" % (save_path, name), 'w+')
f_nucleoli = open("%s/%s_data_nucleoli.txt" % (save_path, name), 'w+')
elif analyze_organelle == 'sg':
f_sg = open("%s/%s_data_sg.txt" % (save_path, name), 'w+')
count = 0
for s in range(len(dirs)):
data_path = dirs[s]
if os.path.exists("%s/data_full.txt" % data_path):
f1_full = open("%s/data_full.txt" % data_path, 'r')
dat.append_data(f_full, f1_full, count)
f1_full.close()
f1_log = open("%s/data_log.txt" % data_path, 'r')
dat.append_data(f_log, f1_log, count)
f1_log.close()
f1_ctrl = open("%s/data_ctrl.txt" % data_path, 'r')
dat.append_data(f_ctrl, f1_ctrl, count)
f1_ctrl.close()
if analyze_organelle == 'nucleoli':
f1_nuclear = open("%s/data_nuclear.txt" % data_path, 'r')
dat.append_data(f_nuclear, f1_nuclear, count)
f1_nuclear.close()
f1_nucleoli = open("%s/data_nucleoli.txt" % data_path, 'r')
dat.append_data(f_nucleoli, f1_nucleoli, count)
f1_nucleoli.close()
elif analyze_organelle == 'sg':
import os
import shared.dataframe as dat
data_source = "/Users/xiaoweiyan/Dropbox/LAB/ValeLab/Projects/Blob_bleacher/Data/20210323_SG_top10MonoclonalCells/" \
"dataAnalysis/"
save_path = "/Users/xiaoweiyan/Dropbox/LAB/ValeLab/Projects/SG/Exp/" \
"20201100_exp_proofTestOf10Genes_cellLineGeneration/02_CellLineGeneration/" \
"20210324_dataAnalysis_monoclonalCells/"
name = '95-5_5_7_8'
dirs = [x[0] for x in os.walk(data_source)]
dirs.pop(0)
num_dir = len(dirs)
if not os.path.exists(save_path):
os.makedirs(save_path)
f_full = open("%s/%s_data.txt" % (save_path, name), 'w+')
for s in range(len(dirs)):
data_path = dirs[s]
if os.path.exists("%s/data.txt" % data_path):
f1_full = open("%s/data.txt" % data_path, 'r')
dat.append_data(f_full, f1_full, s)
f1_full.close()
f_full.close()
print('Done')