def test_BuildMS(self, skipTest=False):
import csv
survey = csv.reader(open(self.survey_file , 'r'), delimiter=',', quotechar='"')
# skip header, there is probably a better way to do this
survey.next()
stats = Statistics(self.taxonomy)
_count=0
for row in survey:
tax_string = row[2]
stats.add_case(tax_string, parse_order=self.ms_parse_order)
stats.finalize()
ms = MappingScheme(self.taxonomy)
ms_zone = MappingSchemeZone('ALL')
ms.assign(ms_zone, stats)
#ms.save(self.ms_file)
if skipTest:
return ms
ms2 = MappingScheme(self.taxonomy)
ms2.read(self.ms_file)
self.assertEqual(
ms.get_assignment_by_name("ALL").to_xml().strip().__len__(),
ms2.get_assignment_by_name("ALL").to_xml().strip().__len__()
)
def test_BuildMS(self, skipTest=False):
import csv
survey = csv.reader(open(self.survey_file, 'r'),
delimiter=',',
quotechar='"')
# skip header, there is probably a better way to do this
survey.next()
stats = Statistics(self.taxonomy)
_count = 0
for row in survey:
tax_string = row[2]
stats.add_case(tax_string, parse_order=self.ms_parse_order)
stats.finalize()
ms = MappingScheme(self.taxonomy)
ms_zone = MappingSchemeZone('ALL')
ms.assign(ms_zone, stats)
#ms.save(self.ms_file)
if skipTest:
return ms
ms2 = MappingScheme(self.taxonomy)
ms2.read(self.ms_file)
self.assertEqual(
ms.get_assignment_by_name("ALL").to_xml().strip().__len__(),
ms2.get_assignment_by_name("ALL").to_xml().strip().__len__())
def test_LoadMS(self, skipTest=False, statsOnly=True):
ms = MappingScheme(self.taxonomy)
ms.read(self.ms_file)
if skipTest:
if statsOnly:
return ms.get_assignment_by_name("ALL")
else:
return ms
stats = ms.get_assignment_by_name("ALL")
attributes = stats.get_attributes(stats.get_tree())
self.assertEqual(sorted(attributes), sorted(self.ms_parse_order))
def test_LoadMS(self, skipTest=False, statsOnly=True):
ms = MappingScheme(self.taxonomy)
ms.read(self.ms_file)
if skipTest:
if statsOnly:
return ms.get_assignment_by_name("ALL")
else:
return ms
stats = ms.get_assignment_by_name("ALL")
attributes = stats.get_attributes(stats.get_tree())
self.assertEqual(sorted(attributes), sorted(self.ms_parse_order))
