Python HasWorkingModel.load示例

示例#1

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)
        self.listOfCompartments = self.getModel().listOfCompartments
        self.listOfReactions = self.getModel().listOfReactions

        if self.isModelLoaded():
            if self.isCompModelDefinition():
                self.listOfSpecies = [
                    species for species in self.getModel().listOfSpecies
                ]

            elif self.isCompInternalSubmodel():
                self.listOfSpecies = [
                    species for species in self.getModel().listOfSpecies
                ]

            elif self.isFlattenModel():
                # Would be nice to also draw the boundaries of the submodels here
                self.listOfSpecies = [
                    species for species in self.getModel().listOfSpecies
                    if species.isInReactions(including_modifiers=True)
                ]

            else:

                self.listOfSpecies = [
                    species for species in self.getModel().listOfSpecies
                    if species.isInReactions(including_modifiers=True)
                ]

示例#2

文件： ModelCompartmentsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)
		if self.isModelLoaded():
			self.listOfCompartments = self.getModel().listOfCompartments
			self.listOfUnits = self.getModel().listOfUnitDefinitions

示例#3

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)
        if self.isModelLoaded():
            self.listOfCompartments = self.getModel().listOfCompartments
            self.listOfUnits = self.getModel().listOfUnitDefinitions

示例#4

文件： GetEquilibriumCurve.py 项目： vincent-noel/SigNetSim

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)
        t_model = SbmlModel.objects.get(project=self.project_id,
                                        id=self.model_id)
        self.listOfComputations = Continuation.objects.filter(
            project=self.project, model=t_model)

示例#5

文件： ModelRulesView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.loadRules()
			self.loadGlobalVariables()

示例#6

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)
        if self.isModelLoaded():
            self.loadSpecies()
            self.loadCompartments()
            self.loadUnits()

示例#7

文件： ModelSpeciesView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)
		if self.isModelLoaded():
			self.loadSpecies()
			self.loadCompartments()
			self.loadUnits()

示例#8

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadSpecies()
            self.loadDataSets(request)
            self.loadParameters(request)

示例#9

文件： GetSubstitution.py 项目： vincent-noel/SigNetSim

	def load(self, request, *args, **kwargs):
		HasWorkingModel.load(self, request, *args, **kwargs)

		self.listOfObjects = []
		for object in self.getModel().listOfSbmlObjects:
			if isinstance(object, Variable) and not object.isStoichiometry():
				self.listOfObjects.append(object)
		self.listOfSubmodels = self.getModel().listOfSubmodels

示例#10

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadRules()
            self.loadGlobalVariables()

示例#11

文件： TimeSeriesSimulationView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.loadVariables()
			self.loadReactions()
			self.loadExperiments()

示例#12

文件： PhasePlaneSimulationView.py 项目： vincent-noel/SigNetSim

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadVariables()
            self.loadReactions()
            self.loadExperiments()

示例#13

文件： ModelParametersView.py 项目： bruno-fs/SigNetSim

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadParameters()
            self.loadReactions()
            self.loadUnits()

示例#14

文件： ModelParametersView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.loadParameters()
			self.loadReactions()
			self.loadUnits()

示例#15

    def load(self, request, *args, **kwargs):
        HasWorkingModel.load(self, request, *args, **kwargs)

        for variable in self.getModel().listOfVariables:
            if ((variable.isParameter() and variable.isGlobal())
                    or variable.isSpecies() or variable.isCompartment()
                    or variable.isStoichiometry()):

                self.listOfVariables.append(variable)

示例#16

文件： ModelOptimizationView.py 项目： msreis/SigNetSim

	def post(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)

		if "action" in request.POST:
			if self.isChooseModel(request):
				# Already done !
				pass

		return TemplateView.get(self, request, *args, **kwargs)

示例#17

文件： ModelOptimizationView.py 项目： bruno-fs/SigNetSim

    def post(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        if "action" in request.POST:
            if self.isChooseModel(request):
                # Already done !
                pass

        return TemplateView.get(self, request, *args, **kwargs)

示例#18

文件： GetEvent.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):
		HasWorkingModel.load(self, request, *args, **kwargs)

		for variable in self.getModel().listOfVariables:
			if ((variable.isParameter() and variable.isGlobal())
				or variable.isSpecies()
				or variable.isCompartment()
				or variable.isStoichiometry()):

				self.listOfVariables.append(variable)

示例#19

文件： ModelSubmodelsView.py 项目： vincent-noel/SigNetSim

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadSubmodels()
            self.loadProjectModels(request)
            self.loadConversionFactors()
            self.loadObjects()
            self.loadSubstitutions()

示例#20

文件： ModelSubmodelsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.loadSubmodels()
			self.loadProjectModels(request)
			self.loadConversionFactors()
			self.loadObjects()
			self.loadSubstitutions()

示例#21

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if len(args) > 0:
            self.setModel(request, int(args[0]))

        if self.isModelLoaded():
            self.listOfUnits = self.getModel().listOfUnitDefinitions
            self.listOfParameters = self.getModel().listOfParameters
            self.sbmlLevels = self.getModel().getSbmlLevels()
            self.form.load()

示例#22

文件： ModelMiscView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if len(args) > 0:
			self.setModel(request, int(args[0]))

		if self.isModelLoaded():
			self.listOfUnits = self.getModel().listOfUnitDefinitions
			self.listOfParameters = self.getModel().listOfParameters
			self.sbmlLevels = self.getModel().getSbmlLevels()
			self.form.load()

示例#23

文件： ModelAnnotationsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if len(args) > 0:
			self.setModel(request, int(args[0]))

		if self.isModelLoaded():
			self.form.load()
			self.modelHistory = self.getModel().modelHistory
			if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0:
				self.modelPublication = self.getModel().getAnnotation().getIsDescribedBy()[0]

示例#24

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if len(args) > 0:
            self.setModel(request, int(args[0]))

        if self.isModelLoaded():
            self.form.load()
            self.modelHistory = self.getModel().modelHistory
            if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0:
                self.modelPublication = self.getModel().getAnnotation(
                ).getIsDescribedBy()[0]

示例#25

    def load(self, request, *args, **kwargs):

        HasErrorMessages.clearErrors(self)
        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.listOfEvents = self.getModel().listOfEvents
            self.getModel().listOfVariables.classifyVariables()

            self.listOfVariables = []
            for variable in self.getModel().listOfVariables:
                if ((variable.isParameter() and variable.isGlobal())
                        or variable.isSpecies() or variable.isCompartment()
                        or variable.isStoichiometry()):
                    self.listOfVariables.append(variable)

示例#26

文件： ModelAnnotationsView.py 项目： bruno-fs/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if len(args) > 0:
			self.setModel(request, int(args[0]))

		if self.isModelLoaded():
			# self.listOfUnits = self.getModel().listOfUnitDefinitions.values()
			# self.listOfParameters = self.getModel().listOfParameters.values()
			# self.sbmlLevels = self.getModel().getSbmlLevels()
			self.form.load()
			self.modelHistory = self.getModel().modelHistory
			if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0:
				self.modelPublication = self.getModel().getAnnotation().getIsDescribedBy()[0]

示例#27

文件： ModelEventsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasErrorMessages.clearErrors(self)
		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.listOfEvents = self.getModel().listOfEvents
			self.getModel().listOfVariables.classifyVariables()

			self.listOfVariables = []
			for variable in self.getModel().listOfVariables:
				if ((variable.isParameter() and variable.isGlobal())
					or variable.isSpecies()
					or variable.isCompartment()
					or variable.isStoichiometry()):
					self.listOfVariables.append(variable)

示例#28

文件： ModelOverviewView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)
		self.listOfCompartments = self.getModel().listOfCompartments
		self.listOfReactions = self.getModel().listOfReactions

		if self.isModelLoaded():
			if self.isCompModelDefinition():
				self.listOfSpecies = [species for species in self.getModel().listOfSpecies]

			elif self.isCompInternalSubmodel():
				self.listOfSpecies = [species for species in self.getModel().listOfSpecies]

			elif self.isFlattenModel():
				# Would be nice to also draw the boundaries of the submodels here
				self.listOfSpecies = [species for species in self.getModel().listOfSpecies if species.isInReactions(including_modifiers=True)]

			else:

				self.listOfSpecies = [species for species in self.getModel().listOfSpecies if species.isInReactions(including_modifiers=True)]

示例#29

文件： GetContinuationStatus.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)
		t_model = SbmlModel.objects.get(project=self.project_id, id=self.model_id)
		self.listOfComputations = Continuation.objects.filter(project=self.project, model=t_model)

示例#30

文件： ModelUnitsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.loadUnitDefinitions()

示例#31

文件： ModelOptimizationView.py 项目： bruno-fs/SigNetSim

    def get(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        return TemplateView.get(self, request, *args, **kwargs)

示例#32

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)
        if self.isModelLoaded():
            self.listOfSpecies = self.model.listOfSpecies.values()

示例#33

文件： SbmlIdValidator.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):
		HasWorkingModel.load(self, request, *args, **kwargs)

示例#34

文件： DataOptimizationView.py 项目： bruno-fs/SigNetSim

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.form.loadParameters(request)

示例#35

文件： ModelUnitsView.py 项目： bruno-fs/SigNetSim

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)

        if self.isModelLoaded():
            self.loadUnitDefinitions()

示例#36

文件： ListOfOptimizationsView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)
		self.loadOptimizations(request)

示例#37

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)
        if self.isModelLoaded():
            self.listOfSpecies = self.getModel().listOfSpecies.values()
            self.listOfReactions = self.getModel().listOfReactions.values()

示例#38

文件： AnalyseBifurcationView.py 项目： vincent-noel/SigNetSim

	def load(self, request, *args, **kwargs):
		HasWorkingModel.load(self, request, *args, **kwargs)
		HasErrorMessages.clearErrors(self)
		self.loadConstants()
		self.loadComputations()

示例#39

文件： ListOfOptimizationsView.py 项目： vincent-noel/SigNetSim

    def load(self, request, *args, **kwargs):

        HasWorkingModel.load(self, request, *args, **kwargs)
        self.loadOptimizations(request)

示例#40

文件： ModelOptimizationView.py 项目： msreis/SigNetSim

	def get(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)

		return TemplateView.get(self, request, *args, **kwargs)

示例#41

文件： DataOptimizationView.py 项目： msreis/SigNetSim

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)

		if self.isModelLoaded():
			self.form.loadParameters(request)

示例#42

文件： AddDataset.py 项目： vincent-noel/SigNetSim

 def load(self, request, *args, **kwargs):
     HasWorkingModel.load(self, request, *args, **kwargs)

示例#43

	def load(self, request, *args, **kwargs):

		HasWorkingModel.load(self, request, *args, **kwargs)
		self.modelInstance = self.getModelInstance()
		self.loadSystem()