def pick_events(window=(-100, 500), filter=(0.033, 2.), phase='P', new_sampling_rate=20): #@ReservedAssignment
logfile = os.path.dirname(data.rf_events) + '/log_pick_events_%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
log.info('***** Pick events: %s' % util.parameters())
mod_data.eventPicker(data, component='all', phase=phase, window=window,
filter=filter, new_sampling_rate=new_sampling_rate)
def pick_events(
window=(-100, 500), filter=(0.033, 2.), phase='P',
new_sampling_rate=20): #@ReservedAssignment
logfile = os.path.dirname(data.rf_events) + '/log_pick_events_%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
log.info('***** Pick events: %s' % util.parameters())
mod_data.eventPicker(data,
component='all',
phase=phase,
window=window,
filter=filter,
new_sampling_rate=new_sampling_rate)
def calculate_rf(year='*', pp=False, rotateLQT=True, deconvolvef=False):
logfile = data.rf_results_dir + 'a_log%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
log.info('***** Calculate RF')
for station in data.stations.keys():
stream = read(data.rf_events % (station, year + '.QHD'))
if pp:
stream.setPhase('PP')
stream.pspier(60, data.stations)
log.info('number of events: %s' % (len(stream) // 3))
#stream.filter2(0.033, 2.)
stream.trim2(-20, 100, relative='ponset')
stream.sort(('event.id', 'station', 'component'))
stream.check()
stream.setHI('mark', False)
if rotateLQT:
stream.rotateZNE2LQT(-5, 15, usetheo=True)
stream.afarm(signoise=2.0, remove=True)
else:
#stream.rotateZNE2LQT(-5, 15, usetheo=True)
#stream.afarm(signoise=2.0, remove=True)
#stream.trim2(-20, 100, relative='ponset')
#stream.rotateLQT2ZNE(usetheo=True)
stream.rotateNE2RT()
#stream.afarm(signoise=2.0, remove=True)
#stream.trim2(-25, 100, relative='ponset')
# log.info('number of events after first farm: %s' % (len(stream)//3))
# util.ipshell()
#stream.receiverf(water=0.005, gauss=5, tshift=20, pad=0,
# window='tukey', start=-10, end=30, where='ponset', lenslope=5)
if deconvolvef:
stream.receiverf()
else:
stream.receivert()
#stream.receiverSH(-10, 80, 1)
#stream.afarm('rf', signoise=2., signoiseQ=1., maxL=1 / 1.5, sigQ=False, broad=True, remove=False)
#stream.afarm('rf', signoise=False, signoiseQ=False, maxL=False, sigQ=False, broad=False, remove=False)
#log.info('number of events after second farm: %s' % (len(stream)//3))
stream.write(data.rf_results % (station, '') + 'nomout', 'Q')
#stream.writey(data.rf_results % (station, '%s') + '_nomout', 'Q')
print stream.getReasons()
def calculate_rf(year='*', pp=False, rotateLQT=True, deconvolvef=False):
logfile = data.rf_results_dir + 'a_log%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
log.info('***** Calculate RF')
for station in data.stations.keys():
stream = read(data.rf_events % (station, year + '.QHD'))
if pp:
stream.setPhase('PP')
stream.pspier(60, data.stations)
log.info('number of events: %s' % (len(stream) // 3))
#stream.filter2(0.033, 2.)
stream.trim2(-20, 100, relative='ponset')
stream.sort(('event.id', 'station', 'component'))
stream.check()
stream.setHI('mark', False)
if rotateLQT:
stream.rotateZNE2LQT(-5, 15, usetheo=True)
stream.afarm(signoise=2.0, remove=True)
else:
#stream.rotateZNE2LQT(-5, 15, usetheo=True)
#stream.afarm(signoise=2.0, remove=True)
#stream.trim2(-20, 100, relative='ponset')
#stream.rotateLQT2ZNE(usetheo=True)
stream.rotateNE2RT()
#stream.afarm(signoise=2.0, remove=True)
#stream.trim2(-25, 100, relative='ponset')
# log.info('number of events after first farm: %s' % (len(stream)//3))
# util.ipshell()
#stream.receiverf(water=0.005, gauss=5, tshift=20, pad=0,
# window='tukey', start=-10, end=30, where='ponset', lenslope=5)
if deconvolvef:
stream.receiverf()
else:
stream.receivert()
#stream.receiverSH(-10, 80, 1)
#stream.afarm('rf', signoise=2., signoiseQ=1., maxL=1 / 1.5, sigQ=False, broad=True, remove=False)
#stream.afarm('rf', signoise=False, signoiseQ=False, maxL=False, sigQ=False, broad=False, remove=False)
#log.info('number of events after second farm: %s' % (len(stream)//3))
stream.write(data.rf_results % (station, '') + 'nomout', 'Q')
#stream.writey(data.rf_results % (station, '%s') + '_nomout', 'Q')
print stream.getReasons()
def mout(station='*', year='*'):
log.info('***** Move Out correction')
global rf_stream
logfile = data.rf_results_dir + 'a_mout_log%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
rf_stream = read(data.rf_results % (station, year) + 'nomout.QHD')
if False:
st2 = rf_stream.copy()
st2.moveout(phase='Ppps')
st2.trim2(-20, 100)
st2.write(data.rf_results % '_Ppps', 'Q')
st3 = rf_stream.copy()
st3.moveout(phase='Ppss')
st3.trim2(-20, 100)
st3.write(data.rf_results % '_Ppss', 'Q')
rf_stream.moveout(phase='Ps')
#rf_stream.trim2(-20, 100)
rf_stream.writex(data.rf_results % ('%s', '') + 'mout', 'Q', years=False)
def mout(station='*', year='*'):
log.info('***** Move Out correction')
global rf_stream
logfile = data.rf_results_dir + 'a_mout_log%s.txt'
util.checkDir(logfile)
util.setRootLogger(logfile=logfile % '', logdebugfile=logfile % '_debug')
rf_stream = read(data.rf_results % (station, year) + 'nomout.QHD')
if False:
st2 = rf_stream.copy()
st2.moveout(phase='Ppps')
st2.trim2(-20, 100)
st2.write(data.rf_results % '_Ppps', 'Q')
st3 = rf_stream.copy()
st3.moveout(phase='Ppss')
st3.trim2(-20, 100)
st3.write(data.rf_results % '_Ppss', 'Q')
rf_stream.moveout(phase='Ps')
#rf_stream.trim2(-20, 100)
rf_stream.writex(data.rf_results % ('%s', '') + 'mout', 'Q', years=False)
def main():
global data, plotdir, mark
##### Parkfield filenames
# pkd = mod_data.Parkfield()
# pkd.events = '/home/richter/Data/events/events_30-90_mag5.5_Parkfield.txt'
# pkd.rf_events = pkd.data + '/receiver/events30-90/%s_%s'
# pkd.rf_results = pkd.results + '/receiver/results/%s_%s'
# pkd.rf_results_dir = pkd.results + '/receiver/results/'
# pkd.rf_events = pkd.data + '/receiver/events30-90_mag5.5/%s_%s'
# pkd.rf_results = pkd.results + '/receiver/results_mag5.5/%s_%s'
# pkd.rf_results_dir = pkd.results + '/receiver/results_mag5.5/'
# pkd.rf_plot_dir = pkd.rf_results_dir + 'plots/'
##### IPOC filenames
ipoc = mod_data.IPOC()
ipoc.events = '/home/richter/Data/events/2012_03_events_27-93_mag5.5_IPOC.txt'
ipoc.rf_events = ipoc.data + '/receiver/2012_events_mag5.5/%s_%s'
ipoc.rf_results = ipoc.results + '/receiver/2012_mag5.5_RT/%s_%s'
ipoc.rf_results_dir = ipoc.results + '/receiver/2012_mag5.5_RT/'
ipoc.rf_plot_dir = ipoc.rf_results_dir + 'plots/'
##### EventPicker
# data=pkd
# pick_events()
# data.events = '/home/richter/Data/events/events_90-160_mag5.5_Parkfield.txt'
# data.rf_events = data.data + '/receiver/events90-160_mag5.5/%s_%s'
# pick_events(window = (-100,400), phase = 'PP')
data = ipoc
# data.stations.pick('LVC')
# events2 = events.Events.read(data.events)
# events2.pick(after='2012-01-01')
# data.events = events2
#pick_events()
# data.events = '/home/richter/Data/events/events_90-160_mag5.5_IPOC.txt'
# data.rf_events = data.data + '/receiver/events90-160_mag5.5/%s_%s'
# pick_events(window = (-100,400), phase = 'PP')
##### Constrain events
#from sito import Events
#data.events = Events.read(data.events)
#data.events.pick(after='2010-01-01')
##### Calculating RFs
# logging.basicConfig()
# data=pkd
# plotdir = data.rf_plot_dir
# util.checkDir(plotdir)
# calculate_rf()
# mout()
## produce_event_files('PKD')
# create_rf_plots(years=range(1996, 2011))
#
## create_interval_plot('225<=st.azi<=265.7')
## time_binned('PKD', 1996.75, 2011.25, 0.5,'225<=st.azi<=265.7')
#
# # IPOC
logging.basicConfig()
data = ipoc
plotdir = data.rf_plot_dir
util.checkDir(plotdir)
calculate_rf(rotateLQT=False)
mout()
#mout('LVC')
# produce_event_files('PB02')
###create_rf_plots(components='LQT') # Do not use!
create_rf_plots(components='ZRT')
def plotXcorrs(data, correlations, t1, t2, filters=None, filter_now=True, start=None, end=None, select=None, plot_overview=True, plot_years=True,
add_to_title='', add_to_file='', show=False, landscape=False, use_dlognorm=True, period=24 * 3600, stack=None, ext='.png', **kwargs):
figsize = (8.267, 11.693)
if landscape:
figsize = figsize[::-1]
util.checkDir(data.getPlotX(('', ''), t1, stack=stack))
if filters is None:
filters = (None,)
if stack:
print 'Plot stack xcorrs...'
else:
print 'Plot xcorrs...'
for correlation in ProgressBar()(correlations):
stations = correlation[0][:-1], correlation[1][:-1]
try:
dist = data.stations.dist(*stations)
except:
#TaiQ station
start = -150
end = 150
if start is None or end is None:
if dist >= 120:
t = (dist // 100) * 50 + 100
else:
t = 100
#print stations, dist, t
startt = -t
endt = t
else:
startt = start
endt = end
if correlation[0] == correlation[1] and (start is None or start < 0):
startt = 0
if filter_now:
try:
stream_orig = data.readX(correlation, t1, t2, period=period, filter=None, stack=stack)
except IOError as ex:
print ex
continue
for filter_ in filters:
if filter_now:
stream = stream_orig.copy()
if filter_:
stream.filter2(*filter_)
else:
try:
stream = data.readX(correlation, t1, t2, period=period, filter=filter_, stack=stack)
except IOError as ex:
print ex
continue
if select:
stream = stream.select(expr=select)
#print stream
if len(stream) > 0:
if plot_overview:
if show:
save = None
figtitle = add_to_title
else:
savebase = data.getPlotX(correlation, 'all', period=period, filter=filter_, stack=stack) + add_to_file
save = savebase + ext
savebase = os.path.basename(savebase)
figtitle = savebase + ' ' + add_to_title
stream.plotXcorr(startt, endt, imshow=True, use_dlognorm=use_dlognorm,
fig=plt.figure(figsize=figsize),
figtitle=figtitle, save=None, show=show,
dateformatter='%Y-%m-%d', #dateformatter='%y %b'
** kwargs)
tit = stream[0].stats.station
t**s = stream[0].stats.station.split('-')
if t**s[0] == t**s[1]:
tit = t**s[0]
tit = tit + ' ' + add_to_title
plt.gcf().axes[1].annotate(tit, (0.5, 1.), (0, 5), 'axes fraction', 'offset points', clip_on=False, ha='center', va='bottom')
plt.gcf().savefig(save, bbox_inches='tight')
if show:
plt.show()
plt.close()
if plot_years:
for ys in streamyeargen2(stream):
t_year, s_year = ys
if show:
save = None
figtitle = add_to_title
else:
savebase = data.getPlotX(correlation, t_year, period=period, filter=filter, stack=stack) + add_to_file
save = savebase + ext
savebase = os.path.basename(savebase)
figtitle = savebase + ' ' + add_to_title
s_year.plotXcorr(startt, endt, imshow=True, use_dlognorm=use_dlognorm,
fig=plt.figure(figsize=figsize),
figtitle=figtitle, #'station year ' + add_to_title,
dateformatter='%y-%m-%d', show=False,
save=save,
**kwargs)
def main():
global data, plotdir, mark
##### Parkfield filenames
# pkd = mod_data.Parkfield()
# pkd.events = '/home/richter/Data/events/events_30-90_mag5.5_Parkfield.txt'
# pkd.rf_events = pkd.data + '/receiver/events30-90/%s_%s'
# pkd.rf_results = pkd.results + '/receiver/results/%s_%s'
# pkd.rf_results_dir = pkd.results + '/receiver/results/'
# pkd.rf_events = pkd.data + '/receiver/events30-90_mag5.5/%s_%s'
# pkd.rf_results = pkd.results + '/receiver/results_mag5.5/%s_%s'
# pkd.rf_results_dir = pkd.results + '/receiver/results_mag5.5/'
# pkd.rf_plot_dir = pkd.rf_results_dir + 'plots/'
##### IPOC filenames
ipoc = mod_data.IPOC()
ipoc.events = '/home/richter/Data/events/2012_03_events_27-93_mag5.5_IPOC.txt'
ipoc.rf_events = ipoc.data + '/receiver/2012_events_mag5.5/%s_%s'
ipoc.rf_results = ipoc.results + '/receiver/2012_mag5.5_RT/%s_%s'
ipoc.rf_results_dir = ipoc.results + '/receiver/2012_mag5.5_RT/'
ipoc.rf_plot_dir = ipoc.rf_results_dir + 'plots/'
##### EventPicker
# data=pkd
# pick_events()
# data.events = '/home/richter/Data/events/events_90-160_mag5.5_Parkfield.txt'
# data.rf_events = data.data + '/receiver/events90-160_mag5.5/%s_%s'
# pick_events(window = (-100,400), phase = 'PP')
data = ipoc
# data.stations.pick('LVC')
# events2 = events.Events.read(data.events)
# events2.pick(after='2012-01-01')
# data.events = events2
#pick_events()
# data.events = '/home/richter/Data/events/events_90-160_mag5.5_IPOC.txt'
# data.rf_events = data.data + '/receiver/events90-160_mag5.5/%s_%s'
# pick_events(window = (-100,400), phase = 'PP')
##### Constrain events
#from sito import Events
#data.events = Events.read(data.events)
#data.events.pick(after='2010-01-01')
##### Calculating RFs
# logging.basicConfig()
# data=pkd
# plotdir = data.rf_plot_dir
# util.checkDir(plotdir)
# calculate_rf()
# mout()
## produce_event_files('PKD')
# create_rf_plots(years=range(1996, 2011))
#
## create_interval_plot('225<=st.azi<=265.7')
## time_binned('PKD', 1996.75, 2011.25, 0.5,'225<=st.azi<=265.7')
#
# # IPOC
logging.basicConfig()
data = ipoc
plotdir = data.rf_plot_dir
util.checkDir(plotdir)
calculate_rf(rotateLQT=False)
mout()
#mout('LVC')
# produce_event_files('PB02')
###create_rf_plots(components='LQT') # Do not use!
create_rf_plots(components='ZRT')
if len(stream) == 0:
continue
if USE_TWS_AFTER_SW:
dist = data.stations.dist(correlation[0][:-1], correlation[1][:-1])
if dist > 550:
continue
direct = int(round(dist / 3.))
tws = (((-direct - 30 - 80, direct + 30), 80),)
stream.trim2(-trim_stream, trim_stream, 'middle')
stretches = None
if reftr:
stretches = []
for tw in tws[i][0]:
if tw <= border_time:
npzfile = np.load(fit_file % (getCor(*correlation), tw))
stretches.append(-npzfile['sinus_exp'])
result = stream.stretch(reftr=reftr, stretch=stretches, str_range=str_range, nstr=nstr, time_windows=tws[i], sides='right')
if period == 24 * 3600:
dates = [(time + 12 * 3600).toordinal() for time in stream.getHI('starttime')]
else:
def get_ord(time):
day = (time + period / 2)
day = day.toordinal() + 1.*day.hour / 24 + 1.*day.minute / 24 / 60 + 1.*day.second / 24 / 3600
return day
dates = [get_ord(time) for time in stream.getHI('starttime')]
dates = _correct_dates(dates)
print np.array([dates[j + 1] - dates[j] for j in range(len(dates) - 1)])
checkDir(path + 'bla')
np.savez(path + 'data_stretching_%s%s%s%s' % (getCor(*correlation), getFilter(filters[i]), getStack(None, period, stack), add_to_file), tw_start=tws[i][0], tw_width=tws[i][1], dates=dates, **result) #corr=corr, stretch=stretch)