def test_kidney_3d_multichannel(): """Test that 3D multichannel image of kidney tissue can be loaded. Needs internet connection. """ fetch('data/kidney.tif') kidney = data.kidney() assert kidney.shape == (16, 512, 512, 3)
import matplotlib.pyplot as plt import numpy as np from scipy import ndimage as ndi import plotly import plotly.express as px from skimage import data ##################################################################### # Load image # ========== # This biomedical image is available through `scikit-image`'s data registry. data = data.kidney() ##################################################################### # The returned dataset is a 3D multichannel image: print(f'number of dimensions: {data.ndim}') print(f'shape: {data.shape}') print(f'dtype: {data.dtype}') ##################################################################### # Dimensions are provided in the following order: ``(z, y, x, c)``, i.e., # ``[plane, row, column, channel]``. n_plane, n_row, n_col, n_chan = data.shape #####################################################################