def __init__(self,
thetaEta=None,
pucker=None,
sugarDist=None,
startPhosDist=None,
endPhosDist=None):
"""Create and initialize a PseudoPredictor object
OPTIONAL ARGUMENTS:
Note that at least one of these arugments must be provided
thetaEta - A file contianing training data for theta eta Gaussian clusters
pucker - A file contianing training data for P-perp distances
sugarDist - A file contianing training data for sugar-sugar (C1'-C1') distances
startPhosDist - A file contianing training data for starting phosphate-phosphate distances
endPhosDist - A file contianing training data for ending phosphate-phosphate distances
RETURNS:
an initialized PseudoPredictor object
"""
#create a dictionary of the input filenames
inputFiles = locals()
del inputFiles["self"]
self.__inputFiles = inputFiles
self.__thetaEtaPredic = None
self.__puckerPredic = None
self.__sugarDistPredic = None
self.__startPhosDistPredic = None
self.__endPhosDistPredic = None
if thetaEta is not None:
self.__thetaEtaPredic = ThetaEtaPredictor(thetaEta)
if pucker is not None:
self.__puckerPredic = SmoothProb(pucker)
if sugarDist is not None:
self.__sugarDistPredic = SmoothProb(sugarDist)
if startPhosDist is not None:
self.__startPhosDistPredic = SmoothProb(startPhosDist)
if endPhosDist is not None:
self.__endPhosDistPredic = SmoothProb(endPhosDist)
