def user_page_view(context, request):
if request.has_permission('view_details'):
properties = item_view_object(context, request)
else:
item_path = request.resource_path(context)
properties = request.embed(item_path, '@@object')
for path in context.embedded:
expand_path(request, properties, path)
calculated = calculate_properties(context, request, properties, category='page')
properties.update(calculated)
return properties
def get_basic_properties_for_user(request, userid):
user = request.registry[COLLECTIONS]['user'][userid]
user_dict = user.__json__(request)
# Only include certain/applicable fields from profile
include_detail_fields = ['email', 'first_name', 'last_name', 'groups', 'timezone', 'status']
user_actions = calculate_properties(user, request, category='user_action')
properties = {
#'user': request.embed(request.resource_path(user)),
'details' : { p:v for p, v in user_dict.items() if p in include_detail_fields },
'user_actions' : [ v for k, v in sorted(user_actions.items(), key=itemgetter(0)) ]
}
# add uuid to user details
properties['details']['uuid'] = userid
return properties
def session_properties(request):
for principal in request.effective_principals:
if principal.startswith('userid.'):
break
else:
return {}
namespace, userid = principal.split('.', 1)
user = request.registry[COLLECTIONS]['user'][userid]
user_actions = calculate_properties(user, request, category='user_action')
properties = {
'user': request.embed(request.resource_path(user)),
'user_actions': [v for k, v in sorted(user_actions.items(), key=itemgetter(0))]
}
if 'auth.userid' in request.session:
properties['auth.userid'] = request.session['auth.userid']
return properties
def session_properties(request):
for principal in request.effective_principals:
if principal.startswith('userid.'):
break
else:
return {}
namespace, userid = principal.split('.', 1)
user = request.registry[COLLECTIONS]['user'][userid]
user_actions = calculate_properties(user, request, category='user_action')
properties = {
'user': request.embed(request.resource_path(user)),
'user_actions': [v for k, v in sorted(user_actions.items(), key=itemgetter(0))],
'admin': 'group.admin' in request.effective_principals
}
if 'auth.userid' in request.session:
properties['auth.userid'] = request.session['auth.userid']
return properties
def get_basic_properties_for_user(request, userid):
user = request.registry[COLLECTIONS]['user'][userid]
user_dict = user.__json__(request)
# Only include certain/applicable fields from profile
include_detail_fields = [
'email', 'first_name', 'last_name', 'groups', 'timezone', 'status',
'project'
]
user_actions = calculate_properties(user, request, category='user_action')
properties = {
#'user': request.embed(request.resource_path(user)),
'details':
{p: v
for p, v in user_dict.items() if p in include_detail_fields},
'user_actions':
[v for k, v in sorted(user_actions.items(), key=itemgetter(0))]
}
# add uuid to user details
properties['details']['uuid'] = userid
return properties
def download(context, request):
""" Navigates to the IGV snapshot hrf on the bam_snapshot field. """
calculated = calculate_properties(context, request)
s3_client = boto3.client('s3')
params_to_get_obj = {
'Bucket': request.registry.settings.get('file_wfout_bucket'),
'Key': calculated['bam_snapshot']
}
location = s3_client.generate_presigned_url(
ClientMethod='get_object',
Params=params_to_get_obj,
ExpiresIn=36*60*60
)
if asbool(request.params.get('soft')):
expires = int(parse_qs(urlparse(location).query)['Expires'][0])
return {
'@type': ['SoftRedirect'],
'location': location,
'expires': datetime.datetime.fromtimestamp(expires, pytz.utc).isoformat(),
}
# 307 redirect specifies to keep original method
raise HTTPTemporaryRedirect(location=location) # 307
