def biosample_synonyms(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
syns = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
syns.update(registry['ontology'][term_id]['synonyms'])
return list(syns)
def developmental_slims(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
slims = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
slims.update(registry['ontology'][term_id]['developmental'])
return list(slims)
def system_slims(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
slims = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
slims.update(registry['ontology'][term_id]['systems'])
return list(slims)
def biosample_synonyms(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
syns = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
syns.update(registry['ontology'][term_id]['synonyms'])
return list(syns)
def developmental_slims(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
slims = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
slims.update(registry['ontology'][term_id]['developmental'])
return list(slims)
def system_slims(self, registry, biosample_term_id):
biosample_term_id = ensurelist(biosample_term_id)
slims = set()
for term_id in biosample_term_id:
if term_id in registry['ontology']:
slims.update(registry['ontology'][term_id]['systems'])
return list(slims)
def assay_synonyms(self, registry, assay_term_id):
assay_term_id = ensurelist(assay_term_id)
syns = set()
for term_id in assay_term_id:
if term_id in registry['ontology']:
syns.update(registry['ontology'][term_id]['synonyms'] + [
registry['ontology'][term_id]['name'],
])
return list(syns)
def assay_synonyms(self, registry, assay_term_id):
assay_term_id = ensurelist(assay_term_id)
syns = set()
for term_id in assay_term_id:
if term_id in registry['ontology']:
syns.update(registry['ontology'][term_id]['synonyms'] + [
registry['ontology'][term_id]['name'],
])
return list(syns)
